Publications of Adán Andrés Ramírez Rojas

Pozhydaieva, N.; Billau, F. A.; Wolfram-Schauerte, M.; Ramírez Rojas, A. A.; Paczia, N.; Schindler, D.; Höfer, K.: Temporal epigenome modulation enables efficient bacteriophage engineering and functional analysis of phage DNA modifications. PLOS Genetics 20 (9), e1011384 (2024)

Brück, M.; Köbel, T. S.; Dittmar, S.; Ramírez Rojas, A. A.; Georg, J.; Berghoff, B. A.; Schindler, D.: A library-based approach allows systematic and rapid evaluation of seed region length and reveals design rules for synthetic bacterial small RNAs. iScience 27 (9), 110774 (2024)

Lindeboom, T. A.; Sanchez Olmos, M. d. C.; Schulz, K.; Brinkmann, C. K.; Ramírez Rojas, A. A.; Hochrein, L.; Schindler, D.: An optimized genotyping workflow for identifying highly SCRaMbLEd synthetic yeasts. ACS Synthetic Biology 13 (4), pp. 1116 - 1127 (2024)

Ramírez Rojas, A. A.; Brinkmann, C. K.; Köbel, T. S.; Schindler, D.: DuBA.flow─A low-cost, long-read amplicon sequencing workflow for the validation of synthetic DNA constructs. ACS Synthetic Biology (2024)

Abramczyk, D.; Sanchez Olmos, M. d. C.; Ramírez Rojas, A. A.; Schindler, D.; Robertson, D.; McColm, S.; Marston, A. L.; Barlow, P. N.: A supernumerary synthetic chromosome in Komagataella phaffii as a repository for extraneous genetic material. Microbial Cell Factories 22 (1), 259 (2023)

Luo, S.; Diehl, C.; He, H.; Bae, Y.; Klose, M.; Claus, P.; Cortina, N. S.; Fernandez, C. A.; Schulz-Mirbach, H. A. M.; McLean, R. et al.; Ramírez Rojas, A. A.; Schindler, D.; Paczia, N.; Erb, T. J.: Construction and modular implementation of the THETA cycle for synthetic CO₂ fixation. Nature Catalysis 6 (12), pp. 1228 - 1240 (2023)

Steube, N.; Moldenhauer, M.; Weiland, P.; Saman, D.; Kilb, A.; Ramírez Rojas, A. A.; Garg, S.; Schindler, D.; Graumann, P. L.; Benesch, J. L. P. et al.; Bange, G.; Friedrich, T.; Hochberg, G. K. A.: Fortuitously compatible protein surfaces primed allosteric control in cyanobacterial photoprotection. Nature Ecology & Evolution 7, pp. 756 - 767 (2023)

Ramírez Rojas, A. A.; Swidah, R.; Schindler, D.: Microbes of traditional fermentation processes as synthetic biology chassis to tackle future food challenges. Frontiers in Bioengineering and Biotechnology 10, 982975 (2022)

Ramírez Rojas, A. A.; Brinkmann, C. K.; Schindler, D.: Validation of Golden Gate Assemblies using highly multiplexed nanopore amplicon sequencing. In: Golden Gate Cloning. Methods in Molecular Biology, Vol. 2850, pp. 171 - 196 (Ed. Schindler, D.). Humana, New York, NY (2025)

Ramírez Rojas, A. A.: Title not yet available. Dissertation, Philipps-Universität Marburg, Marburg (2024)

Brueck, M.; Koebel, T. S.; Dittmar, S.; Ramírez Rojas, A. A.; Georg, J.; Berghoff, B. A.; Schindler, D.: A library-based approach allows systematic and rapid evaluation of seed region length and reveals design rules for synthetic bacterial small RNAs. bioRxiv: the preprint server for biology, 2024.04.24.590872 (2024)

Wolfram-Schauerte, M.; Moskalchuk, A.; Pozhydaieva, N.; Ramírez Rojas, A. A.; Schindler, D.; Kaiser, S.; Paczia, N.; Höfer, K.: T4 phage RNA is NAD-capped and alters the NAD-cap epitranscriptome of Escherichia coli during infection through a phage-encoded decapping enzyme. bioRxiv: the preprint server for biology, 2024.04.04.588121 (2024)

Pozhydaieva, N.; Billau, F. A.; Wolfram-Schauerte, M.; Ramírez Rojas, A. A.; Paczia, N.; Schindler, D.; Höfer, K.: Temporal epigenome modulation enables efficient bacteriophage engineering and functional analysis of phage DNA modifications. bioRxiv: the preprint server for biology, 2024.01.28.577628 (2024)

Abramczyk, D.; Sanchez Olmos, M. d. C.; Ramírez Rojas, A. A.; Schindler, D.; Robertson, D.; McColm, S.; Marston, A.; Barlow, P.: A supernumerary synthetic chromosome in Komagataella phaffii as a repository for extraneous genetic material. bioRxiv: the preprint server for biology, 2023.10.05.561004 (2023)