Publications

2024

Journal Article

Schlimpert, S.; Thanbichler, M.: Editorial overview: Rise of the bacterial nanomachines. Current Opinion in Microbiology 80, 102515 (2024)

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Sourjik, V.; Patil, K. R.: Editorial overview: Systems and synthetic biology of microbial cells and communities. Current Opinion in Microbiology 80, 102517 (2024)

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Schann, K.; Bakker, J.; Boinot, M.; Kuschel, P.; He, H.; Nattermann, M.; Paczia, N.; Erb, T. J.; Bar-Even, A.; Wenk, S.: Design, construction and optimization of formaldehyde growth biosensors with broad application in biotechnology. Microbial Biotechnology 17 (7), e14527 (2024)

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Kim, Y.; Lee, S. H.; Gade, P.; Nattermann, M.; Maltseva, N.; Endres, M.; Chen, J.; Wichmann, P.; Hu, Y.; Marchal, D. G. et al.; Yoshikuni, Y.; Erb, T. J.; Gonzalez, R.; Michalska, K.; Joachimiak, A.: Revealing reaction intermediates in one-carbon elongation by thiamine diphosphate/CoA-dependent enzyme family. Communications Chemistry 7 (1) (2024)

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Böhm, C. V.; Inckemann, R.; Burgis, M.; Baumann, J.; Brinkmann, C. K.; Lipinska, K. E.; Gilles, S.; Freudigmann, J.; Seiler, V. N.; Clark, L. G. et al.; Jewett, M. C.; Voll, L. M.; Niederholtmeyer, H.: Chloroplast Cell-Free Systems from Different Plant Species as a Rapid Prototyping Platform. ACS Synthetic Biology (2024)

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Pérez-Burgos, M.; Herfurth, M.; Kaczmarczyk, A.; Harms, A.; Huber, K.; Jenal, U.; Glatter, T.; Søgaard-Andersen, L.: A deterministic, c-di-GMP-dependent program ensures the generation of phenotypically similar, symmetric daughter cells during cytokinesis. Nature Communications 15 (1), 6014 (2024)

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Giaveri, S.; Bohra, N.; Diehl, C.; Yang, H. Y.; Ballinger, M.; Paczia, N.; Glatter, T.; Erb, T. J.: Integrated translation and metabolism in a partially self-synthesizing biochemical network. Science 385 (6705), pp. 174 - 178 (2024)

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Liu, Y.; Karmakar, R.; Steinchen, W.; Mukherjee, S.; Bange, G.; Schafer, L. V.; Thanbichler, M.: Membrane binding properties of the cytoskeletal protein bactofilin. bioRxiv: the preprint server for biology, 2024.06.14.599034 (2024)

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Bischoff, A.; Ortelt, J.; Dünschede, B.; Zegarra, V.; Bedrunka, P.; Bange, G.; Schünemann, D.: The role of chloroplast SRP54 domains and its C-terminal tail region in post- and cotranslational protein transport in vivo. Journal of Experimental Botany, erae293 (2024)

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Dornes, A.; Schmidt, L. M.; Mais, C.-N.; Hook, J. C.; Pané-Farré, J.; Kressler, D.; Thormann, K.; Bange, G.: Polar confinement of a macromolecular machine by an SRP-type GTPase. Nature Communications 15 (1), 5797 (2024)

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Gemmecker, Y.; Winiarska, A.; Hege, D.; Kahnt, J.; Seubert, A.; Szaleniec, M.; Heider, J.: A pH-dependent shift of redox cofactor specificity in a benzyl alcohol dehydrogenase of aromatoleum aromaticum EbN1. Applied Microbiology and Biotechnology 108, 410 (2024)

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Szymanski, E. A.; Schindler, D.: A (metaphorical) moment for RNA-based biotechnology?: Current metaphors for RNA limit development of and public communication about RNA-based technologies. EMBO Reports, pp. 1 - 5 (2024)

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Sendker, F. L.; Schlotthauer, T. J.; Mais, C.-N.; Lo, Y. K.; Girbig, M.; Bohn, S.; Heimerl, T.; Schindler, D.; Weinstein, A.; Metzger, B. P. et al.; Thornton, J. W.; Pillai, A.; Bange, G.; Schuller, J.; Hochberg, G. K. A.: Frequent transitions in self-assembly across the evolution of a central metabolic enzyme. bioRxiv: the preprint server for biology, 2024.07.05.602260 (2024)

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Schada v. Borzyskowsi, L.; Lucas, H.; Kremer, K.; Barthel, S.; Pommerenke, B.; Glatter, T.; Paczia, N.; Erhard, B.; Erb, T. J.: Multiple levels of transcriptional regulation control glycolate metabolism in Paracoccus denitrificans. mBio 0, e0152424 (2024)

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Küffner, A. M.; Pommerenke, B.; Kley, L.; Ng, J. Z. Y.; Prinz, S.; Tinzl-Zechner, M.; Claus, P.; Paczia, N.; Zarzycki, J.; Hochberg, G. K. A. et al.; Erb, T. J.: Bottom-up reconstruction of minimal pyrenoids provides insights into the evolution and mechanisms of carbon concentration by EPYC1 proteins. bioRxiv: the preprint server for biology, 2024.06.28.601168 (2024)

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Ren, M.; Li, D.; Addison, H. G.; Noteborn, W. E. M.; Andeweg, E. H.; Glatter, T.; de Winde, J. H.; Rebelein, J. G.; Lamers, M. H.; Schada von Borzyskowski, L.: Promiscuous NAD-dependent dehydrogenases enable efficient bacterial growth on the PET monomer ethylene glycol. bioRxiv: the preprint server for biology, 2024.06.28.601223 (2024)

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Ermoli, F.; Spahn, C. K.; Glatter, T.; Diepold, A.: Yersinia actively downregulates type III secretion and adhesion at higher cell densities. bioRxiv, 2024.06.27.601021 (2024)

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Corrao, M.; He, H.; Liebermeister, W.; Noor, E.: A compact model of Escherichia coli core and biosynthetic metabolism. arXiv, arXiv:2406.16596 (2024)

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de Vries, S. T.; Koebel, T. S.; Sanal, A.; Schindler, D.: In- & Out-Cloning: Plasmid toolboxes for scarless transcription unit and modular Golden Gate acceptor plasmid assembly. bioRxiv: the preprint server for biology, 2024.06.22.600171 (2024)

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Ulgen Gokduman, F.; Yılmaz, S.; Bode, H. B.: Enhanced production of trans-cinnamic acid in Photorhabdus luminescens with homolog expression and deletion strategies. Journal of Applied Microbiology 135 (7), lxae149 (2024)

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Teteneva, N.; Sanches-Medeiros, A.; Sourjik, V.: Genome-wide screen of genetic determinants that govern Escherichia coli growth and persistence in lake water. The ISME Journal 18 (1), wrae096 (2024)

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Sanchez-Londono, M.; Rust, S.; Hernandez-Tamayo, R.; Gomes-Filho, J. V.; Thanbichler, M.; Randau, L.: Visualization of Type IV-A1 CRISPR-mediated repression of gene expression and plasmid replication. bioRxiv: the preprint server for biology, 2024.06.12.598411 (2024)

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Gehl, M.; Demmer, U.; Ermler, U.; Shima, S.: Mutational and structural studies of (βα)8-barrel fold methylene-tetrahydropterin reductases utilizing a common catalytic mechanism. Protein Science 33 (6), e5018 (2024)

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Defelipe, L. A.; Veith, K.; Burastero, O.; Kupriianova, T.; Bento, I.; Skruzny, M.; Köbel, K.; Uetrecht, C.; Thuenauer, R.; García-Alai, M. M.: Subtleties in clathrin heavy chain binding boxes provide selectivity among adaptor proteins of budding yeast. bioRxiv, 2024.05.30.596561 (2024)

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Journal Article

Krüsemann, J. L.; Lindner, S. N.: Bioproduction from methanol. Nature Catalysis 7 (5), pp. 472 - 474 (2024)

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Journal Article

Präve, L.; Seyfert, C. E.; Bozhüyük, K. A. J.; Racine, E.; Müller, R.; Bode, H. B.: Investigation of the Odilorhabdin biosynthetic gene cluster using NRPS engineering. Angewandte Chemie International Edition, e202406389 (2024)

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Journal Article

Robinson, D. G.; Mallatt, J.; Peer, W. A.; Sourjik, V.; Taiz, L.: Cell consciousness: a dissenting opinion: The cellular basis of consciousness theory lacks empirical evidence for its claims that all cells have consciousness. EMBO Reports 25, pp. 2162 - 2167 (2024)

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Journal Article

Burt, M.; Angelidou, G.; Mais, C. N.; Preußer, C.; Glatter, T.; Heimerl, T.; Groß, R.; Serrania, J.; Boosarpu, G.; Pogge von Strandmann, E. et al.; Müller, J. A.; Bange, G.; Becker, A.; Lehmann, M.; Jonigk, D.; Neubert, L.; Freitag, H.; Paczia, N.; Schmeck, B.; Jung, A. L.: Lipid A in outer membrane vesicles shields bacteria from polymyxins. Journal of extracellular vesicles 13 (5), e12447 (2024)

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Journal Article

Ross, P. A.; Xu, W.; Jalomo-Khayrova, E.; Bange, G.; Gumerov, V. M.; Bradley , P. H.; Sourjik, V.; Zhulin , I. B.: Framework for exploring the sensory repertoire of the human gut microbiota. mBio 15 (6), e01039-24 (2024)

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Hirst, J.; Ivanov, B. S.; Bridges, H. R.; Jarman, O. D.: Structure of the turnover-ready state of an ancestral respiratory complex I. bioRxiv: the preprint server for biology, 2024.05.14.594153 (2024)

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Journal Article

Mies, U. S.; Hervé, V.; Kropp, T.; Platt, K.; David, S.-D.; Jan, Š.; Brune, A.: Genome reduction and horizontal gene transfer in the evolution of Endomicrobia—rise and fall of an intracellular symbiosis with termite gut flagellates. mBio 15 (6), e00826-24 (2024)

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Journal Article

Abdallah , R. Z.; Elbehery , A. H. A.; Ahmed, S. F.; Ouf, A.; Malash , M. N.; Liesack, W.; Siam, R.: Deciphering the functional and structural complexity of the Solar Lake flat mat microbial benthic communities. mSystems 9, e00095-24 (2024)

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Preprint

Inckemann, R.; Chotel, T.; Brinkmann, C. K.; Burgis, M.; Andreas, L.; Baumann, J.; Sharma, P.; Klose, M.; Barret, J.; Ries, F. et al.; Paczia, N.; Glatter, T.; Mackinder, L.; Willmund, F.; Erb, T. J.: Advancing chloroplast synthetic biology through high-throughput plastome engineering of Chlamydomonas reinhardtii. bioRxiv: the preprint server for biology, 2024.05.08.593163 (2024)

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Journal Article

Ulug, D.; Touray, M.; Hazal Gulsen, S.; Cimen, H.; Hazir, C.; Bode, H. B.; Hazir, S.: A taste of a toxin paradise: Xenorhabdus and Photorhabdus bacterial secondary metabolites against Aedes aegypti larvae and eggs. Journal of Invertebrate Pathology 205, 108126 (2024)

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Journal Article

Körner, D.; Schäfer, N. M.; Lagares Jr., A.; Birmes, L.; Oehlmann, N. N.; Addison, H. G.; Pöhl, S.; Thanbichler, M.; Rebelein, J. G.; Petersen, J. et al.; Becker, A.: Modular low-copy-number plasmid vectors for Rhodobacterales with extended host range in Alphaproteobacteria. ACS Synthetic Biology 13 (5), pp. 1537 - 1548 (2024)

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Journal Article

Ramming, L.; Stukenberg, D.; Sanchez Olmos, M. d. C.; Glatter, T.; Becker, A.; Schindler, D.: Rationally designed chromosome fusion does not prevent rapid growth of Vibrio natriegens. Communications Biology 7 (1), 519 (2024)

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Preprint

Sepúlveda, A. C.; Speth, D. R.; Kerl, C.; Doherty-Weason, D.; Vignale, F. A.; Santha, K.; Mohr, W.; Chennu, A.; Merz, E.; Beer, D. et al.; Farias, M. E.; Klatt, J. M.: The interplay between light, arsenic and H₂O₂ controls oxygenic photosynthesis in a Precambrian analog cyanobacterial mat. bioRxiv: the preprint server for biology, 2024.04.27.591451 (2024)

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Barthel, S.; Brenker, L.; Diehl, C.; Bohra, N.; Giaveri, S.; Paczia, N.; Erb, T. J.: In vitro transcription-based biosensing of glycolate for prototyping of a complex enzyme cascade. bioRxiv: the preprint server for biology, 2024.04.26.591264 (2024)

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Brueck, M.; Koebel, T. S.; Dittmar, S.; Ramírez Rojas, A. A.; Georg, J.; Berghoff, B. A.; Schindler, D.: A library-based approach allows systematic and rapid evaluation of seed region length and reveals design rules for synthetic bacterial small RNAs. bioRxiv: the preprint server for biology, 2024.04.24.590872 (2024)

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Bischoff, A.; Ortelt, J.; Duenschede, B.; Zegarra, V.; Bedrunka, P.; Bange, G.; Schünemann, D.: The role of chloroplast SRP54 domains and its C-terminal tail region in post- and cotranslational protein transport in vivo. bioRxiv: the preprint server for biology, 2024.04.21.590438 (2024)

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Pérez-López, M. I.; Lubrano, P.; Angelidou, G.; Glatter, T.; Paczia, N.; Link, H.; Sourjik, V.: The SPFH complex HflK-HflC regulates aerobic respiration in bacteria. bioRxiv: the preprint server for biology, 2024.04.21.590321 (2024)

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Lazaridi, S.; Yuan, J.; Lemmin, T.: Atomic insights into the signaling landscape of E. coli PhoQ Histidine Kinase from Molecular Dynamics simulations. bioRxiv: the preprint server for biology, 2024.04.19.590235 (2024)

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Jiang, S.; Celen, G.; Glatter, T.; Niederholtmeyer, H.; Yuan, J.: A cell-free system for functional studies of small membrane proteins. bioRxiv: the preprint server for biology, 2023.12.22.573026 (2024)

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Journal Article

Treuner-Lange, A.; Zheng, W.; Viljoen, A.; Lindow, S.; Herfurth, M.; Dufrêne, Y. F.; Søgaard-Andersen, L.; Egelman, E. H.: Tight-packing of large pilin subunits provides distinct structural and mechanical properties for the Myxococcus xanthus type IVa pilus. Proceedings of the National Academy of Sciences of the United States of America 121 (17), e2321989121 (2024)

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Touray, M.; Ulug, D.; Gulsen, S. H.; Cimen, H.; Hazir, C.; Bode, H. B.; Hazir, S.: Natural products from Xenorhabdus and Photorhabdus show promise as biolarvicides against Aedes albopictus. Pest Management Science (2024)

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Journal Article

Lindeboom, T. A.; Sanchez Olmos, M. d. C.; Schulz, K.; Brinkmann, C. K.; Ramírez Rojas, A. A.; Hochrein, L.; Schindler, D.: An optimized genotyping workflow for identifying highly SCRaMbLEd synthetic yeasts. ACS Synthetic Biology 13 (4), pp. 1116 - 1127 (2024)

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Journal Article

Sendker, F. L.; Lo, Y. K.; Heimerl, T.; Bohn, S.; Persson, L. J.; Mais, C.-N.; Sadowska, W.; Paczia, N.; Nußbaum, E.; del Carmen Sánchez Olmos, M. et al.; Forchhammer, K.; Schindler, D.; Erb, T. J.; Benesch, J. L. P.; Marklund, E. G.; Bange, G.; Schuller, J. M.; Hochberg, G. K. A.: Emergence of fractal geometries in the evolution of a metabolic enzyme. Nature 628 (8009), pp. 894 - 900 (2024)

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Journal Article

Pisarz, F.; Glatter, T.; Süss, D.-T. M.; Heermann, R.; Regaiolo, A.: The Type VI secretion systems of the insect pathogen Photorhabdus luminescens are involved in interbacterial competition, motility and secondary metabolism. The Microbe 3, 100067 (2024)

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Espada Burriel, S.; Colin, R.: Active density pattern formation in bacterial binary mixtures. PRX Life 2 (2), 023002 (2024)

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Wolfram-Schauerte, M.; Moskalchuk, A.; Pozhydaieva, N.; Ramírez Rojas, A. A.; Schindler, D.; Kaiser, S.; Paczia, N.; Höfer, K.: T4 phage RNA is NAD-capped and alters the NAD-cap epitranscriptome of Escherichia coli during infection through a phage-encoded decapping enzyme. bioRxiv: the preprint server for biology, 2024.04.04.588121 (2024)

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Dornes, A.; Schmidt, L. M.; Mais, C.-N.; Hook, J. C.; Pané-Farré, J.; Kressler, D.; Thormann, K.; Bange, G.: Polar confinement of a macromolecular machine by an SRP-type GTPase. bioRxiv: the preprint server for biology, 2024.04.02.587688 (2024)

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Rill, A.; Zhao, L.; Bode, H. B.: Genetic toolbox for Photorhabdus and Xenorhabdus: pSEVA based heterologous expression systems and CRISPR/Cpf1 based genome editing for rapid natural product profiling. Microbial Cell Factories 23, 98 (2024)

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Lisevich, I. M.; Colin, R.; Yang, H. Y.; Ni, B.; Sourjik, V.: Physics and physiology determine strategies of bacterial investment in flagellar motility. bioRxiv: the preprint server for biology, 2024.03.30.587422 (2024)

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Scarinci, G.; Ariens, J.-L.; Angelidou, G.; Schmidt, S.; Glatter, T.; Paczia, N.; Sourjik, V.: Enhanced metabolic entanglement emerges during the evolution of an interkingdom microbial community. bioRxiv: the preprint server for biology, 2024.03.30.587424 (2024)

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Gomez, A.; Tinzl, M.; Stoffel, G. M. M.; Westedt, H.; Grubmüller, H.; Erb, T. J.; Vöhringer-Martinez, E.; Stripp, S. T.: Infrared spectroscopy reveals metal-independent carbonic anhydrase activity in crotonyl-CoA carboxylase/reductase. Chemical Science 15 (13), pp. 4960 - 4968 (2024)

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Köhler, R.; Murray, S. M.: Plasmid partitioning driven by collective migration of ParA between nucleoid lobes. Proceedings of the National Academy of Sciences of the United States of America 121 (18), e2319205121 (2024)

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Aziz, I.; Kayastha, K.; Kaltwasser, S.; Vonck, J.; Welsch, S.; Murphy, B. J.; Kahnt, J.; Wu, D.; Wagner, T.; Shima, S. et al.; Ermler, U.: Structural and mechanistic basis of the central energy-converting methyltransferase complex of methanogenesis. Proceedings of the National Academy of Sciences of the United States of America 121 (14), e2315568121 (2024)

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Dvořák, P.; Burýšková, B.; Popelářová, B.; Ebert, B. E.; Botka, T.; Bujdoš, D.; Sánchez-Pascuala, A.; Schöttler, H.; Hayen, H.; de Lorenzo, V. et al.; Blank, L. M.; Benešík, M.: Synthetically-primed adaptation of Pseudomonas putida to a non-native substrate D-xylose. Nature Communications 15, 2666 (2024)

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Joachimiak, A.; Kim, Y.; Lee, S. H.; Gade, P.; Nattermann, M.; Maltseva, N.; Endres, M.; Chen, J.; Wichmann, P.; Hu, Y. et al.; Marchal, D. G.; Yoshikuni, Y.; Erb, T. J.; Gonzalez, R.; Michalska, K.: Revealing reaction intermediates in one-carbon elongation ThDP/CoA dependent enzyme family. Research Square (2024)

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Bozhüyük, K. A. J.; Präve, L.; Kegler, C.; Schenk, L.; Kaiser, S.; Schelhas, C. S.; Shi, Y.-N.; Kuttenlochner, W.; Schreiber, M.; Kandler, J. et al.; Alanjary, M.; Mohiuddin, T. M.; Groll, M.; Hochberg, G. K. A.; Bode, H. B.: Evolution-inspired engineering of nonribosomal peptide synthetases. Science 383 (6689), eadg4320 (2024)

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Köhler, R.; Murray, S. M.: Plasmid partitioning driven by collective migration of ParA between nucleoid lobes. bioRxiv: the preprint server for biology, 2023.10.16.562490 (2024)

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Brabender, M.; Henriques Pereira, D. P.; Mrnjavac, N.; Schlikker, M. L.; Kimura, Z.-I.; Sucharitakul, J.; Kleinermanns, K.; Tüysüz, H.; Buckel, W.; Preiner, M. et al.; Martin, W. F.: Ferredoxin reduction by hydrogen with iron functions as an evolutionary precursor of flavin-based electron bifurcation. Proceedings of the National Academy of Sciences 121 (13), e2318969121 (2024)

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Herdering, E.; Reif-Trauttmansdorff, T.; Kumar, A.; Habenicht, T.; Hochberg, G. K. A.; Bohn, S.; Schuller, J.; Schmitz, R. A.: 2-oxoglutarate triggers assembly of active dodecameric Methanosarcina mazei glutamine synthetase. bioRxiv: the preprint server for biology (2024)

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Schmalhofer, M.; Vagstad, A. L.; Zhou, Q.; Bode, H. B.; Groll, M.: Polyketide trimming shapes dihydroxynaphthalene-melanin and anthraquinone pigments. Advanced Science 11 (22), e2400184 (2024)

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Lehr, F.-X.; Pavletić, B.; Glatter, T.; Heimerl, T.; Moeller, R.; Niederholtmeyer, H.: Enhanced assembly of bacteriophage T7 produced in cell-free reactions under simulated microgravity. npj Microgravity 10, 30 (2024)

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Kargeti, M.; Kalita, I.; Hoch, S.; Ratnikava, M.; Xu, W.; Ni, B.; Dy, R. L.; Colin, R.; Sourjik, V.: Experimental evolution of a reduced bacterial chemotaxis network. bioRxiv: the preprint server for biology, 2024.03.14.584839 (2024)

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Nomura, S.; Paczia, N.; Kahnt, J.; Shima, S.: Isolation of an H₂-dependent electron-bifurcating CO₂-reducing megacomplex with MvhB polyferredoxin from Methanothermobacter marburgensis. The FEBS Journal 291 (11), pp. 2449 - 2460 (2024)

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Oklitschek, M.; Carreira, L. A. M.; Muratoğlu, M.; Søgaard-Andersen, L.; Treuner-Lange, A.: Combinatorial control of type IVa pili formation by the four polarized regulators MglA, SgmX, FrzS and SopA. bioRxiv: the preprint server for biology, 2024.03.11.584430 (2024)

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Schada v. Borzyskowsi, L.; Hermann, L.; Kremer, K.; Barthel, S.; Pommerenke, B.; Glatter, T.; Paczia, N.; Bremer, E.; Erb, T. J.: Multiple levels of transcriptional regulation control glycolate metabolism in Paracoccus denitrificans. bioRxiv: the preprint server for biology, 2024.03.11.584432 (2024)

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Salgado, J. F. M.; Premkrishnan, B. N. V.; Oliveira, E. L.; Vettath, V. K.; Goh, F. G.; Hou, X.; Drautz-Moses, D. I.; Cai, Y.; Schuster, S. C.; Junqueira, A. C. M.: The interplay between nutrition and the dynamics of the midgut microbiome of the mosquito Aedes aegypti reveals putative symbionts. bioRxiv: the preprint server for biology, 2024.03.04.583003 (2024)

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Saft, M.; Schneider, L.; Ho, C.-C.; Maiterth, E.; Menke, J.; Sendker, F.; Steinchen, W.; Essen, L.-O.: One more for light-triggered conformational changes in cryptochromes: CryP from Phaeodactylum tricornutum. Journal of Molecular Biology 436 (5) (2024)

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Schuster, M.; Schweizer, G.; Reissmann, S.; Happel, P.; Assmann, D.; Roessel, N.; Gueldener, U.; Mannhaupt, G.; Ludwig, N.; Winterberg, S. et al.; Pellegrin, C.; Tanaka, S.; Vincon, V.; Lo Presti, L.; Wang, L.; Bender, L.; Gonzalez, C.; Vranes, M.; Kaemper, J.; Seong, K.; Krasileva, K.; Kahmann, R.: Novel secreted effectors conserved among smut fungi contribute to the virulence of Ustilago maydis. Molecular Plant-Microbe Interactions 37 (3), pp. 250 - 263 (2024)

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Li, X.; Bei, Q.; Rabiei Nematabad, M.; Peng, J.; Liesack, W.: Time-shifted expression of acetoclastic and methylotrophic methanogenesis by a single Methanosarcina genomospecies predominates the methanogen dynamics in Philippine rice field soil. Microbiome 12, 39 (2024)

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Ungerhofer, K. A.; Plümper, O.; Preiner, M.; Reichart, G.-J.; Kraal, P.: Coupled carbon‑iron‑phosphorus cycling in the Rainbow hydrothermal vent field. Chemical Geology 650, 121994 (2024)

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Addison, H. G.; Glatter, T.; Hochberg, G. K. A.; Rebelein, J. G.: Two distinct ferredoxins are essential for nitrogen fixation by the iron nitrogenase in Rhodobacter capsulatus. mBio 15 (3), e0331423 (2024)

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Boehm, C. V.; Inckemann, R.; Burgis, M.; Baumann, J.; Brinkmann, C. K.; Lipinska, K. E.; Gilles, S.; Freudigmann, J.; Seiler, V.; Clark, L. G. et al.; Jewett, M. C.; Voll, L. M.; Niederholtmeyer, H.: Chloroplast Cell-Free Systems from Different Plant Species as a Rapid Prototyping Platform. bioRxiv: the preprint server for biology, 2024.02.19.580994 (2024)

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Aydin, E.; Boehme, J.; Keil, B.; Schreiner, S.; Zunar, B.; Glatter, T.; Kilchert, C.: DEAD-box ATPase Dbp2 mediates mRNA release after 3'-end formation. bioRxiv: the preprint server for biology, 2024.02.17.580811 (2024)

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Palma, L.; Frizzo, L.; Kaiser, S.; Berry, C.; Caballero, P.; Bode, H. B.; Valle, D.; E., E.: Genome sequence analysis of native Xenorhabdus strains isolated from entomopathogenic nematodes in Argentina. Toxins 16 (2), 108 (2024)

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Santos, M. N. M.; Pintor, K. L.; Hsieh, P.-Y.; Cheung, Y.-W.; Sung, L.-K.; Shih, Y.-L.; Lai, E.-M.: Agrobacteria deploy two classes of His-Me finger superfamily nuclease effectors exerting different antibacterial capacities against specific bacterial competitors. Frontiers in Microbiology 15, 1351590 (2024)

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Egas, R. A.; Kurth, J. M.; Boeren, S.; Sousa, D. Z.; Welte, C. U.; Sánchez-Andrea, I.: A novel mechanism for dissimilatory nitrate reduction to ammonium in Acididesulfobacillus acetoxydans. mSystems, e00967-23 (2024)

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Peters, L.; Drechsler, M.; Pees, B.; Angelidou, G.; Salzer, L.; Moors, K. A.; Paczia, N.; Schulenburg, H.; Shi, Y.-M.; Kaleta, C. et al.; Witting, M.; Bode, H. B.; Dierking, K.: Polyketide synthase-derived sphingolipids determine microbiota-mediated protection against pathogens in C. elegans. bioRxiv: the preprint server for biology, 2024.02.06.579051 (2024)

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Vojnovic, I.; Caspari, O. D.; Hoşkan, M. A.; Endesfelder, U.: Combining single-molecule and expansion microscopy in fission yeast to visualize protein structures at the nanostructural level. Open Biology 14 (2), 230414 (2024)

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Perez Burgos, M.; Herfurth, M.; Kaczmarczyk, A.; Harms, A.; Huber, K.; Jenal, U.; Glatter, T.; Søgaard-Andersen, L.: A deterministic, c-di-GMP-dependent genetic program ensures the generation of phenotypically similar, symmetric daughter cells during cytokinesis. bioRxiv: the preprint server for biology, 2024.02.06.579105 (2024)

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de Vries, S. T.; Kley, L.; Schindler, D.: Use of a Golden Gate plasmid set enabling scarless MoClo-compatible transcription unit assembly. arXiv, arXiv.2402.03410 (2024)

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Pöhl, S.; Osorio Valeriano, M.; Cserti, E.; Harberding, J.; Hernandez Tamayo, R.; Biboy, J.; Sobetzko, P.; Vollmer, W.; Graumann, P. L.; Thanbichler, M.: A dynamic bactofilin cytoskeleton cooperates with an M23 endopeptidase to control bacterial morphogenesis. eLife 12, RP86577 (2024)

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Schaupp, S.; Arriaza-Gallardo, F. J.; Paczia, N.; Ataka, K.; Shima, S.: Acyl and CO ligands in the [Fe]-hydrogenase cofactor scramble upon photolysis. Angewandte Chemie International Edition 63 (6), e202316478 (2024)

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Nweze, J. E.; Šustr, V.; Brune, A.; Angel, R.: Functional similarity, despite taxonomical divergence in the millipede gut microbiota, points to a common trophic strategy. Microbiome 12, 16 (2024)

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Ramírez Rojas, A. A.; Brinkmann, C. K.; Köbel, T. S.; Schindler, D.: DuBA.flow─A low-cost, long-read amplicon sequencing workflow for the validation of synthetic DNA constructs. ACS Synthetic Biology (2024)

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Pozhydaieva, N.; Billau, F. A.; Wolfram-Schauerte, M.; Ramírez Rojas, A. A.; Paczia, N.; Schindler, D.; Höfer, K.: Temporal epigenome modulation enables efficient bacteriophage engineering and functional analysis of phage DNA modifications. bioRxiv: the preprint server for biology, 2024.01.28.577628 (2024)

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Rojas, A. A. R.; Brinkmann, C. K.; Schindler, D.: Validation of Golden Gate assemblies using highly multiplexed Nanopore amplicon sequencing. arXiv, arXiv:2401.14191 (2024)

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Schulz, L.; Zarzycki, J.; Steinchen, W.; Hochberg, G. K. A.; Erb, T. J.: Layered entrenchment maintains essentiality in protein-protein interactions. bioRxiv: the preprint server for biology, 2024.01.18.576253 (2024)

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Müller, M.-C.; Lemaire, O. N.; Kurth, J. M.; Welte, C. U.; Wagner, T.: Differences in regulation mechanisms of glutamine synthetases from methanogenic archaea unveiled by structural investigations. Communications Biology 7, 111 (2024)

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Su, L.; Huber, E. M.; Westphalen, M.; Gellner, J.; Bode, E.; Köbel, T.; Grün, P.; Alanjary, M. M.; Glatter, T.; Schindler, D. et al.; Groll, M.; Bode, H. B.: Identification, structure and function of the methyltransferase involved in the biosynthesis of the dithiolopyrrolone antibiotic xenorhabdin. bioRxiv: the preprint server for biology, 2024.01.12.575338 (2024)

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Arias-Rojas, A.; Arifah, A.; Angelidou, G.; Alshaar, B.; Schombel, U.; Forest, E.; Frahm, D.; Brinkmann, V.; Paczia, N.; Beisel, C. et al.; Gisch, N.; Iatsenko, I.: MprF-mediated immune evasion is necessary for Lactiplantibacillus plantarum resilience in Drosophila gut during inflammation. bioRxiv: the preprint server for biology, 2024.01.09.574795 (2024)

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Schlotheuber, M.; Voolstra, C. R.; de Beer, D.; Camp, E. F.; Klatt, J. M.; Ghilardi, M.; Neumüller, K.; Ousley, S.; Bejarano, S.: High temporal resolution of hydrogen peroxide (H₂O₂) dynamics during heat stress does not support a causative role in coral bleaching. Coral Reefs (2024)

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Rill, A.; Zhao, L.; Bode, H. B.: Genetic Toolbox for Photorhabdus and Xenorhabdus: pSEVA based heterologous expression systems and CRISPR/Cpf1 based genome editing for rapid natural product profiling. bioRxiv: the preprint server for biology, 2024.01.07.574529 (2024)

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Wang, Z.; Cao, G.; Collier, M. P.; Qiu, X.; Broadway-Stringer, S.; Šaman, D.; Ng, J. Z. Y.; Sen, N.; Azad, A. J.; Hooper, C. et al.; Zimmermann, J.; McDonough, M.; Brem, J.; Rabe, P.; Song, H.; Alderson, T. R.; Schofield, C. J.; Bolla, J. R.; Djinovic-Carugo, K.; Fürst, D. O.; Warscheid, B.; Degiacomi, M. T.; Allison, T. M.; Hochberg, G. K. A.; Robinson, C. V.; Gehmlich, K.; Benesch, J. L.P.: Cardiac stress leads to regulation of Filamin C dimerisation via an ancient phosphorylation-modulated interaction with HSPB7. bioRxiv: the preprint server for biology, 2024.01.05.574393 (2024)

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Wimmi, S.; Fleck, M.; Helbig, C.; Brianceau, C. F.; Langenfeld, K.; Szymanski, W. G.; Angelidou, G.; Glatter, T.; Diepold, A.: Pilotins are mobile T3SS components involved in assembly and substrate specificity of the bacterial type III secretion system. Molecular Microbiology 121, pp. 304 - 323 (2024)

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Billini, M.; Hoffmann, T.; Kühn, J.; Bremer, E.; Thanbichler, M.: The cytoplasmic phosphate level has a central regulatory role in the phosphate starvation response of Caulobacter crescentus. Communications Biology 7, 772 (2024)

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