Publications

2024
Journal Article
Schuster, M.; Schweizer, G.; Reissmann, S.; Happel, P.; Assmann, D.; Roessel, N.; Gueldener, U.; Mannhaupt, G.; Ludwig, N.; Winterberg, S. et al.; Pellegrin, C.; Tanaka, S.; Vincon, V.; Lo Presti, L.; Wang, L.; Bender, L.; Gonzalez, C.; Vranes, M.; Kaemper, J.; Seong, K.; Krasileva, K.; Kahmann, R.: Novel secreted effectors conserved among smut fungi contribute to the virulence of Ustilago maydis. Molecular Plant-Microbe Interactions (2024)
Journal Article
Li, X.; Bei, Q.; Rabiei Nematabad, M.; Peng, J.; Liesack, W.: Time-shifted expression of acetoclastic and methylotrophic methanogenesis by a single Methanosarcina genomospecies predominates the methanogen dynamics in Philippine rice field soil. Microbiome 12, 39 (2024)
Journal Article
Ungerhofer, K. A.; Plümper, O.; Preiner, M.; Reichart, G.-J.; Kraal, P.: Coupled carbon‑iron‑phosphorus cycling in the Rainbow hydrothermal vent field. Chemical Geology 650, 121994 (2024)
Journal Article
Addison, H. G.; Glatter, T.; Hochberg, G. K. A.; Rebelein, J. G.: Two distinct ferredoxins are essential for nitrogen fixation by the iron nitrogenase in Rhodobacter capsulatus. mBio, e03314-23 (2024)
Preprint
Boehm, C. V.; Inckemann, R.; Burgis, M.; Baumann, J.; Brinkmann, C. K.; Lipinska, K. E.; Gilles, S.; Freudigmann, J.; Seiler, V.; Clark, L. G. et al.; Jewett, M. C.; Voll, L. M.; Niederholtmeyer, H.: Chloroplast Cell-Free Systems from Different Plant Species as a Rapid Prototyping Platform. (2024)
Preprint
Aydin, E.; Boehme, J.; Keil, B.; Schreiner, S.; Zunar, B.; Glatter, T.; Kilchert, C.: DEAD-box ATPase Dbp2 mediates mRNA release after 3'-end formation. (2024)
Journal Article
Palma, L.; Frizzo, L.; Kaiser, S.; Berry, C.; Caballero, P.; Bode, H. B.; Valle, D.; E., E.: Genome sequence analysis of native Xenorhabdus strains isolated from entomopathogenic nematodes in Argentina. Toxins 16 (2), 108 (2024)
Journal Article
Santos, M. N. M.; Pintor, K. L.; Hsieh, P.-Y.; Cheung, Y.-W.; Sung, L.-K.; Shih, Y.-L.; Lai, E.-M.: Agrobacteria deploy two classes of His-Me finger superfamily nuclease effectors exerting different antibacterial capacities against specific bacterial competitors. Frontiers in Microbiology 15, 1351590 (2024)
Journal Article
Egas, R. A.; Kurth, J. M.; Boeren, S.; Sousa, D. Z.; Welte, C. U.; Sánchez-Andrea, I.: A novel mechanism for dissimilatory nitrate reduction to ammonium in Acididesulfobacillus acetoxydans. mSystems, e00967-23 (2024)
Preprint
Peters, L.; Drechsler, M.; Pees, B.; Angelidou, G.; Salzer, L.; Moors, K. A.; Paczia, N.; Schulenburg, H.; Shi, Y.-M.; Kaleta, C. et al.; Witting, M.; Bode, H. B.; Dierking, K.: Polyketide synthase-derived sphingolipids determine microbiota-mediated protection against pathogens in C. elegans. (2024)
Journal Article
Vojnovic, I.; Caspari, O. D.; Hoşkan, M. A.; Endesfelder, U.: Combining single-molecule and expansion microscopy in fission yeast to visualize protein structures at the nanostructural level. Open Biology 14 (2), 230414 (2024)
Preprint
Perez Burgos, M.; Herfurth, M.; Kaczmarczyk, A.; Harms, A.; Huber, K.; Jenal, U.; Glatter, T.; Søgaard-Andersen, L.: A deterministic, c-di-GMP-dependent genetic program ensures the generation of phenotypically similar, symmetric daughter cells during cytokinesis. (2024)
Preprint
de Vries, S. T.; Kley, L.; Schindler, D.: Use of a Golden Gate plasmid set enabling scarless MoClo-compatible transcription unit assembly. (2024)
Journal Article
Pöhl, S.; Osorio Valeriano, M.; Cserti, E.; Harberding, J.; Hernandez Tamayo, R.; Biboy, J.; Sobetzko, P.; Vollmer, W.; Graumann, P. L.; Thanbichler, M.: A dynamic bactofilin cytoskeleton cooperates with an M23 endopeptidase to control bacterial morphogenesis. eLife 12, RP86577 (2024)
Journal Article
Schaupp, S.; Arriaza-Gallardo, F. J.; Paczia, N.; Ataka, K.; Shima, S.: Acyl and CO ligands in the [Fe]-hydrogenase cofactor scramble upon photolysis. Angewandte Chemie International Edition, e202316478 (2024)
Journal Article
Nweze, J. E.; Šustr, V.; Brune, A.; Angel, R.: Functional similarity, despite taxonomical divergence in the millipede gut microbiota, points to a common trophic strategy. Microbiome 12, 16 (2024)
Journal Article
Ramírez Rojas, A. A.; Brinkmann, C. K.; Köbel, T. S.; Schindler, D.: DuBA.flow─A low-cost, long-read amplicon sequencing workflow for the validation of synthetic DNA constructs. ACS Synthetic Biology (2024)
Preprint
Pozhydaieva, N.; Billau, F. A.; Wolfram-Schauerte, M.; Ramírez Rojas, A. A.; Paczia, N.; Schindler, D.; Höfer, K.: Temporal epigenome modulation enables efficient bacteriophage engineering and functional analysis of phage DNA modifications. (2024)
Preprint
Rojas, A. A. R.; Brinkmann, C. K.; Schindler, D.: Validation of Golden Gate assemblies using highly multiplexed Nanopore amplicon sequencing. (2024)
Journal Article
Schulz, L.; Zarzycki, J.; Steinchen, W.; Hochberg, G. K. A.; Erb, T. J.: Layered entrenchment maintains essentiality in protein-protein interactions. bioRxiv: the preprint server for biology (2024)
Journal Article
Müller, M.-C.; Lemaire, O. N.; Kurth, J. M.; Welte, C. U.; Wagner, T.: Differences in regulation mechanisms of glutamine synthetases from methanogenic archaea unveiled by structural investigations. Communications Biology 7 (1), 111 (2024)
Preprint
Su, L.; Huber, E. M.; Westphalen, M.; Gellner, J.; Bode, E.; Köbel, T.; Grün, P.; Alanjary, M. M.; Glatter, T.; Schindler, D. et al.; Groll, M.; Bode, H. B.: Identification, structure and function of the methyltransferase involved in the biosynthesis of the dithiolopyrrolone antibiotic xenorhabdin. (2024)
Journal Article
Schlotheuber, M.; Voolstra, C. R.; de Beer, D.; Camp, E. F.; Klatt, J. M.; Ghilardi, M.; Neumüller, K.; Ousley, S.; Bejarano, S.: High temporal resolution of hydrogen peroxide (H2O2) dynamics during heat stress does not support a causative role in coral bleaching. Coral Reefs (2024)
Preprint
Rill, A.; Zhao, L.; Bode, H. B.: Genetic Toolbox for Photorhabdus and Xenorhabdus: pSEVA based heterologous expression systems and CRISPR/Cpf1 based genome editing for rapid natural product profiling. (2024)
Journal Article
Wang, Z.; Cao, G.; Collier, M. P.; Qiu, X.; Broadway-Stringer, S.; Šaman, D.; Ng, J. Z. Y.; Sen, N.; Azad, A. J.; Hooper, C. et al.; Zimmermann, J.; McDonough, M.; Brem, J.; Rabe, P.; Song, H.; Alderson, T. R.; Schofield, C. J.; Bolla, J. R.; Djinovic-Carugo, K.; Fürst, D. O.; Warscheid, B.; Degiacomi, M. T.; Allison, T. M.; Hochberg, G. K. A.; Robinson, C. V.; Gehmlich, K.; Benesch, J. L.P.: Cardiac stress leads to regulation of Filamin C dimerisation via an ancient phosphorylation-modulated interaction with HSPB7. bioRxiv: the preprint server for biology, doi: 10.1101/2024.01.05.574393 (2024)
Journal Article
Wimmi, S.; Fleck, M.; Helbig, C.; Brianceau, C. F.; Langenfeld, K.; Szymanski, W. G.; Angelidou, G.; Glatter, T.; Diepold, A.: Pilotins are mobile T3SS components involved in assembly and substrate specificity of the bacterial type III secretion system. Molecular Microbiology 121, pp. 304 - 323 (2024)
Journal Article
Jakob, S.; Steinchen, W.; Hanßmann, J.; Rosum, J.; Langenfeld, K.; Osorio-Valeriano, M.; Steube, N.; Giammarinaro, P. I.; Hochberg, G. K. A.; Glatter, T. et al.; Bange, G.; Diepold, A.; Thanbichler, M.: The virulence regulator VirB from Shigella flexneri uses a CTP-dependent switch mechanism to activate gene expression. Nature Communications 15 (1), 318 (2024)
Journal Article
Pozhydaieva, N.; Wolfram-Schauerte, M.; Keuthen, H.; Höfer, K.: The enigmatic epitranscriptome of bacteriophages: putative RNA modifications in viral infections. Current Opinion in Microbiology 77, 102417 (2024)
Journal Article
Schmidt, F. V.; Schulz, L.; Zarzycki, J.; Prinz, S.; Oehlmann, N. N.; Erb, T. J.; Rebelein, J. G.: Structural insights into the iron nitrogenase complex. Nature Structural & Molecular Biology 31 (1), pp. 150 - 158 (2024)
Journal Article
Su, L.; Deng, H.: Size matters. Nature Chemical Biology 20 (1), pp. 8 - 10 (2024)
Journal Article
Wimmi, S.; Balinovic, A.; Brianceau, C. F.; Pintor, K. L.; Vielhauer, J.; Turkowyd, B.; Helbig, C.; Fleck, M.; Langenfeld, K.; Kahnt, J. et al.; Glatter, T.; Endesfelder, U.; Diepold, A.: Cytosolic sorting platform complexes shuttle type III secretion system effectors to the injectisome in Yersinia enterocolitica. Nature Microbiology 9, pp. 185 - 199 (2024)
2023
Journal Article
Herfurth, M.; Müller, F.; Søgaard-Andersen, L.; Glatter, T.: A miniTurbo-based proximity labeling protocol to identify conditional protein interactomes in vivo in Myxococcus xanthus. STAR Protocols 4 (4), 102657 (2023)
Preprint
Addison, H. G.; Glatter, T.; Hochberg, G. K. A.; Rebelein, J. G.: Two distinct ferredoxins are essential for nitrogen fixation by the iron nitrogenase in Rhodobacter capsulatus. (2023)
Journal Article
Gomez, A.; Erb, T. J.; Grubmüller, H.; Vöhringer-Martinez, E.: Conformational dynamics of the most efficient carboxylase contributes to efficient CO2 fixation. Journal of Chemical Information and Modeling 63 (24), pp. 7807 - 7815 (2023)
Journal Article
Kamikawa, R.; Mochizuki, T.; Sakamoto, M.; Tanizawa, Y.; Nakayama, T.; Onuma, R.; Cenci, U.; Moog, D.; Speak, S.; Sarkozi, K. et al.; Toseland, A.; van Oosterhout, C.; Oyama, K.; Kato, M.; Kume, K.; Kayama, M.; Azuma, T.; Ishii, K.-i.; Miyashita, H.; Henrissat, B.; Lombard, V.; Win, J.; Kamoun, S.; Kashiyama, Y.; Mayama, S.; Miyagishima, S.-y.; Tanifuji, G.; Mock, T.; Nakamura, Y.: Genome evolution of a nonparasitic secondary heterotroph, the diatom Nitzschia putrida. Science Advances 8 (17), eabi5075 (2023)
Journal Article
Nattermann, M.; Wenk, S.; Pfister, P.; He, H.; Lee, S.H.; Szymanski, W.; Guntermann, N.; Zhu, F.; Nickel, L.; Wallner, C. et al.; Zarzycki, J.; Paczia, N.; Gaißert, N.; Franciò, G.; Leitner, W.; Gonzalez, R.; Erb, T. J.: Engineering a new-to-nature cascade for phosphate-dependent formate to formaldehyde conversion in vitro and in vivo. Nature Communications 14 (1), 2682 (2023)
Journal Article
Novák, L. V. F.; Treitli, S. C.; Pyrih, J.; Hałakuc, P.; Pipaliya, S. V.; Vacek, V.; Brzoň, O.; Soukal, P.; Eme, L.; Dacks, J. B. et al.; Karnkowska, A.; Eliáš, M.; Hampl, V.: Genomics of Preaxostyla flagellates illuminates the path towards the loss of mitochondria. PLOS Genetics 19 (12), e1011050 (2023)
Journal Article
Seifert-Davila, W.; Girbig, M.; Hauptmann, L.; Hoffmann, T.; Eustermann, S.; Müller, C. W.: Structural insights into human TFIIIC promoter recognition. Science Advances 9 (27), eadh2019 (2023)
Journal Article
Gomes-Filho, J. V.; Breuer, R.; Morales-Filloy, H. G.; Pozhydaieva, N.; Borst, A.; Paczia, N.; Soppa, J.; Höfer, K.; Jäschke, A.; Randau, L.: Identification of NAD-RNA species and ADPR-RNA decapping in Archaea. Nature Communications 14, 7597 (2023)
Journal Article
Marchal, D. G.; Schulz, L.; Schuster, I.; Ivanovska, J.; Paczia, N.; Prinz, S.; Zarzycki, J.; Erb, T. J.: Machine learning-supported enzyme engineering toward improved CO2-fixation of Glycolyl-CoA carboxylase. ACS Synthetic Biology 12 (12), pp. 3521 - 3530 (2023)
Preprint
Conrad, R.; Claus, P.: Fractionation of stable carbon isotopes during formate consumption in anoxic rice paddy soils and lake sediments. (2023)
Preprint
Oehlmann, N. N.; Rebelein, J. G.: Generating site saturation mutagenesis libraries and transferring them to broad host range plasmids using type IIS restriction enzymes. (2023)
Preprint
Spahn, C. K.; Middlemiss, S.; Gómez-de-Mariscal, E.; Henriques, R.; Bode, H. B.; Holden, S.; Heilemann, M.: Transertion and cell geometry organize the Escherichia coli nucleoid during rapid growth. (2023)
Journal Article
Erb, T. J.: Photosynthesis 2.0: Realizing new-to-nature CO2-fixation to overcome the limits of natural metabolism. Cold Spring Harbor Perspectives in Biology, a041669 (2023)
Preprint
Touray, M.; Cimen, H.; Bode, E.; Bode, H. B.; Hazir, S.: Effects of Xenorhabdus and Photorhabdus bacterial metabolites on the ovipositional activity of Aedes albopictus. (2023)
Journal Article
Jiang, S.; Steup, L. C.; Kippnich, C.; Lazaridi, S.; Malengo, G.; Lemmin, T.; Yuan, J.: The inhibitory mechanism of a small protein reveals its role in antimicrobial peptide sensing. Proceedings of the National Academy of Sciences of the United States of America 120 (41), e2309607120 (2023)
Preprint
Köbel, T. S.; Schindler, D.: Automation and miniaturization of Golden Gate DNA assembly reactions using acoustic dispensers. (2023)
Journal Article
Herfurth, M.; Pérez-Burgos, M.; Søgaard-Andersen, L.: The mechanism for polar localization of the type IVa pilus machine in Myxococcus xanthus. mBio 14 (5), e01593-23 (2023)
Preprint
Arroyo Perez, E. E.; Hook, J. C.; Alvarado, A.; Wimmi, S.; Glatter, T.; Thormann, K. M.; Ringgaard, S.: A conserved cell-pole determinant organizes proper polar flagellum formation. (2023)
Review Article
Arriaza-Gallardo, F. J.; Zheng, Y.-C.; Gehl, M.; Nomura, S.; Queiroz, F.; Pedro, J.; Shima, S.: [Fe]-hydrogenase, cofactor biosynthesis and engineering. (2023)
Journal Article
Kilian, M.; Bischofs, I. B.: Co-evolution at protein–protein interfaces guides inference of stoichiometry of oligomeric protein complexes by de novo structure prediction. Molecular Microbiology 120 (5), pp. 763 - 782 (2023)
Journal Article
Lee, S. H.; Chou, A.; Nattermann, M.; Zhu, F.; Clomburg, J. M.; Paczia, N.; Erb, T. J.; Gonzalez, R.: Identification of 2-Hydroxyacyl-CoA synthases with high acyloin condensation activity for orthogonal one-carbon bioconversion. ACS Catalysis 13 (18), pp. 12007 - 12020 (2023)
Journal Article
Sahin, S.; Lemaire, O. N.; Belhamri, M.; Kurth, J. M.; Welte, C. U.; Wagner, T.; Milton, R. D.: Bioelectrocatalytic CO2 reduction by Mo-dependent formylmethanofuran dehydrogenase. Angewandte Chemie International Edition, e202311981 (2023)
Journal Article
Conrad, R.; Claus, P.: Fractionation of stable carbon isotopes during microbial propionate consumption in anoxic rice paddy soils. Biogeosciences 20 (17), pp. 3625 - 3635 (2023)
Preprint
Gomez, A.; Erb, T. J.; Grubmüller, H.; Vöhringer-Martinez, E.: Conformational dynamics of the most efficient carboxylase contributes to efficient CO2 fixation. (2023)
Journal Article
Kohm, K.; Jalomo-Khayrova, E.; Krüger, A.; Basu, S.; Steinchen, W.; Bange, G.; Frunzke, J.; Hertel, R.; Commichau, F.; Czech, L.: Structural and functional characterization of MrpR, the master repressor of the Bacillus subtilis prophage SPβ. Nucleic Acids Research 51 (17), pp. 9452 - 9474 (2023)
Journal Article
Lai, L. B.; Gopalan, V.; Jansson, M. D.; Chen, Q.; Zhang, X.; Wolfram-Schauerte, M.; Höfer, K.: Making nucleic acid structures and schematics. Trends in Biochemical Sciences 48 (8), pp. 655 - 658 (2023)
Journal Article
Abbood, N.; Effert, J.; Bozhüyük, K. A. J.; Bode, H. B.: Guidelines for optimizing type S nonribosomal peptide synthetases. ACS Synthetic Biology 12 (8), pp. 2432 - 2443 (2023)
Preprint
Treuner-Lange, A.; Zheng, W.; Viljoen, A.; Lindow, S.; Herfurth, M.; Dufrene, Y. F.; Søgaard-Andersen, L.; Egelman, E.: Large pilin subunits provide distinct structural and mechanical properties for the Myxococcus xanthus type IV pilus. (2023)
Preprint
Jiang, S.; Steup, L. C.; Kippnich, C.; Lazaridi, S.; Malengo, G.; Lemmin, T.; Yuan, J.: The inhibitory mechanism of a small protein reveals its role in antimicrobial peptide sensing. (2023)
Journal Article
Carreira, L. A. M.; Szadkowski, D.; Lometto, S.; Hochberg, G. K. A.; Søgaard-Andersen, L.: Molecular basis and design principles of switchable front-rear polarity and directional migration in Myxococcus xanthus. Nature Communications 14 (1), 4056 (2023)
Journal Article
Ramm, B.; Schumacher, D.; Harms, A.; Heermann, T.; Klos, P.; Müller, F.; Schwille, P.; Søgaard-Andersen, L.: Biomolecular condensate drives polymerization and bundling of the bacterial tubulin FtsZ to regulate cell division. Nature Communications 14 (1), 3825 (2023)
Journal Article
Irazoki, O.; ter Beek, J.; Alvarez, L.; Mateus, A.; Colin, R.; Typas, A.; Savitski, M. M.; Sourjik, V.; Berntsson, R. P.-A.; Cava, F.: D-amino acids signal a stress-dependent run-away response in Vibrio cholerae. Nature Microbiology 8 (8), pp. 1549 - 1560 (2023)
Preprint
Herfurth, M.; Pérez-Burgos, M.; Søgaard-Andersen, L.: The mechanism for polar localization of the type IVa pilus machine. (2023)
Journal Article
Nikolić, I.; Glatter, T.; Ranković, T.; Berić, T.; Stanković, S.; Diepold, A.: Repertoire and abundance of secreted virulence factors shape the pathogenic capacity of Pseudomonas syringae pv. aptata. Frontiers in Microbiology 14, 1205257 (2023)
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Espada Burriel, S.; Colin, R.: Active density fluctuations in bacterial binary mixtures. (2023)
Journal Article
Pfister, P.; Diehl, C.; Hammarlund, E.; Carillo, M.; Erb, T. J.: Enhancing the substrate specificity of Clostridium Succinyl-CoA reductase for synthetic biology and biocatalysis. Biochemistry 61 (11), pp. 1786 - 1793 (2023)
Journal Article
Arora, J.; Buček, A.; Hellemans, S.; Beránková, T.; Arias, J. R.; Fisher, B. L.; Clitheroe, C.; Brune, A.; Kinjo, Y.; Šobotník, J. et al.; Bourguignon, T.: Evidence of cospeciation between termites and their gut bacteria on a geological time scale. Proceedings of the Royal Society B: Biological Sciences 290 (2001), 20230619 (2023)
Journal Article
Kremer, K.; Meier, D.; Theis, L.; Miller, S.; Rost-Nasshan, A.; Naing, Y. T.; Zarzycki, J.; Paczia, N.; Serrania, J.; Blumenkamp, P. et al.; Goesmann, A.; Becker, A.; Thanbichler, M.; Hochberg, G. K. A.; Carter, M. S.; Erb, T. J.: Functional degeneracy in Paracoccus denitrificans Pd1222 is coordinated via RamB, which links expression of the Glyoxylate cycle to activity of the Ethylmalonyl-CoA pathway. Applied and Environmental Microbiology 89 (7), e0023823 (2023)
Journal Article
Laganenka, L.; Sourjik, V.: Bacterial quorum sensing signals at the interdomain interface. Israel Journal of Chemistry 63 (5-6), e202200080 (2023)
Journal Article
McLean, R.; Schwander, T.; Diehl, C.; Cortina, N. S.; Paczia, N.; Zarzycki, J.; Erb, T. J.: Exploring alternative pathways for the in vitro establishment of the HOPAC cycle for synthetic CO2 fixation. Science Advances 9 (24), eadh4299 (2023)
Journal Article
Saleh, D. O.; Horstmann, J. A.; Giralt-Zúñiga, M.; Weber, W.; Kaganovitch, E.; Durairaj, A. C.; Klotzsch, E.; Strowig, T.; Erhardt, M.: SPI-1 virulence gene expression modulates motility of Salmonella typhimurium in a proton motive force- and adhesins-dependent manner. PLOS Pathogens 19 (6), e1011451 (2023)
Journal Article
Seidel, M.; Skotnicka, D.; Glatter, T.; Søgaard-Andersen, L.: During heat stress in Myxococcus xanthus, the CdbS PilZ domain protein, in concert with two PilZ-DnaK chaperones, perturbs chromosome organization and accelerates cell death. PLOS Genetics 19 (6), e1010819 (2023)
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Winiarska, A.; Ramírez-Amador, F.; Hege, D.; Gemmecker, Y.; Prinz, S.; Hochberg, G. K. A.; Heider, J.; Szaleniec, M.; Schuller, J. M.: A bacterial tungsten-containing aldehyde oxidoreductase forms an enzymatic decorated protein nanowire. Science Advances 9 (22), eadg6689 (2023)
Review Article
Zhu, Y.-G.; Peng, J.; Chen, C.; Xiong, C.; Li, S.; Ge, A.; Wang, E.; Liesack, W.: Harnessing biological nitrogen fixation in plant leaves. (2023)
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Guo, K.; Glatter, T.; Paczia, N.; Liesack, W.: Asparagine uptake: a cellular strategy of Methylocystis to combat severe salt stress. Applied and Environmental Microbiology 89 (6), e0011323 (2023)
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Huber, E. M.; Kreling, L.; Heinrich, A. K.; Dunnebacke, M.; Pothig, A.; Bode, H. B.; Groll, M.: A set of closely related methyltransferases for site-specific tailoring of anthraquinone pigments. Structure 31 (5), 573-583.e5. (2023)
Journal Article
Recabarren, R.; Tinzl, M.; Saez, D. A.; Gomez, A.; Erb, T. J.; Vöhringer-Martinez, E.: Covalent adduct formation as a strategy for efficient CO2 fixation in Crotonyl-CoA carboxylases/reductases. ACS Catalysis 13 (9), pp. 6230 - 6241 (2023)
Journal Article
Gehl, M.; Demmer, U.; Ermler, U.; Shima, S.: Crystal structure of FAD-independent methylene-tetrahydrofolate reductase from Mycobacterium hassiacum. Proteins: Structure, Function, and Bioinformatics 91, pp. 1329 - 1340 (2023)
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Brueck, M.; Berghoff, B. A.; Schindler, D.: In silico design, in vitro construction and in vivo application of synthetic small regulatory RNAs in bacteria. (2023)
Journal Article
Philipp, N.; Brinkmann, C. K.; Georg, J.; Schindler, D.; Berghoff, B. A.: DIGGER-Bac: prediction of seed regions for high-fidelity construction of synthetic small RNAs in bacteria. Bioinformatics 39 (5), btad285 (2023)
Journal Article
Barsh, G. S.; Butler, G.; Copenhaver, G. P.; Crosson, S.; Søgaard-Andersen, L.; Stukenbrock, E. H.: Endless microbes most beautiful and most wonderful. PLOS Genetics 19 (4), e1010695 (2023)
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Nweze, J. E.; Šustr, V.; Brune, A.; Angel, R.: Functional similarity despite taxonomical divergence in the millipede gut microbiota points to a common trophic strategy. (2023)
Preprint
Seidel, M.; Skotnicka, D.; Glatter, T.; Søgaard-Andersen, L.: During heat stress in Myxococcus xanthus, the CdbS PilZ domain protein, along with two PilZ-DnaK chaperones, perturbs chromosome organization and accelerates cell death. (2023)
Journal Article
Zegarra, V.; Mais, C.-N.; Freitag, J.; Bange, G.: The mysterious diadenosine tetraphosphate (AP4A). microLife 4, uqad016 (2023)
Preprint
Abbood, N.; Effert, J.; Bozhüyük, K. A. J.; Bode, H. B.: Guidelines for Optimizing Type S Non-Ribosomal Peptide Synthetases. (2023)
Preprint
Nikolic, I.; Glatter, T.; Rankovic, T.; Beric, T.; Stankovic, S.; Diepold, A.: Repertoire and abundance of secreted virulence factors shape the pathogenic capacity of Pseudomonas syringae pv. aptata. (2023)
Journal Article
Schada v. Borzyskowsi, L.; Schulz-Mirbach, H.; Troncoso Castellanos, M.; Severi, F.; Gomez Coronado, P. A.; Paczia, N.; Glatter, T.; Bar-Even, A.; Lindner, S. N.; Erb, T. J.: Implementation of the β-hydroxyaspartate cycle increases growth performance of Pseudomonas putida on the PET monomer ethylene glycol. Metabolic Engineering 76, pp. 97 - 109 (2023)
Journal Article
Gratani, F. L.; Englert, T.; Nashier, P.; Sass, P.; Czech, L.; Neumann, N.; Doello, S.; Mann, P.; Blobelt, R.; Alberti, S. et al.; Forchhammer, K.; Bange, G.; Höfer, K.; Macek, B.: E. coli toxin YjjJ (HipH) is a Ser/Thr protein kinase that impacts cell division, carbon metabolism, and ribosome assembly. mSystems 8 (1), e01043-22. (2023)
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Beyazay, T.; Belthle, K. S.; Farès, C.; Preiner, M.; Moran, J.; Martin, W. F.; Tüysüz, H.: Ambient temperature CO2 fixation to pyruvate and subsequently to citramalate over iron and nickel nanoparticles. Nature Communications 14, 570 (2023)
Journal Article
Diehl, C.; Gerlinger, P.; Paczia, N.; Erb, T. J.: Synthetic anaplerotic modules for the direct synthesis of complex molecules from CO2. Nature Chemical Biology 19 (2), pp. 168 - 175 (2023)
Journal Article
Liu, J.; Li, S.-M.: Genomics-guided efficient identification of 2,5-Diketopiperazine derivatives from Actinobacteria. ChemBioChem 24 (3), e202200502 (2023)
Review Article
Wolfram-Schauerte, M.; Höfer, K.: NAD-capped RNAs - a redox cofactor meets RNA. (2023)
Journal Article
Pfister, P.; Zarzycki, J.; Erb, T. J.: Structural basis for a cork-up mechanism of the intra-molecular Mesaconyl-CoA transferase. Biochemistry 62 (1), pp. 75 - 84 (2023)
Journal Article
Abramczyk, D.; Sanchez Olmos, M. d. C.; Ramírez Rojas, A. A.; Schindler, D.; Robertson, D.; McColm, S.; Marston, A. L.; Barlow, P. N.: A supernumerary synthetic chromosome in Komagataella phaffii as a repository for extraneous genetic material. Microbial Cell Factories 22 (1), 259 (2023)
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Abramczyk, D.; Sanchez Olmos, M. d. C.; Ramírez Rojas, A. A.; Schindler, D.; Robertson, D.; McColm, S.; Marston, A.; Barlow, P.: A supernumerary synthetic chromosome in Komagataella phaffii as a repository for extraneous genetic material. (2023)
Journal Article
Awori, R. M.; Waturu, C. N.; Pidot, S. J.; Amugune, N. O.; Bode, H. B.: Draft genomes, phylogenomic reconstruction and comparative genome analysis of three Xenorhabdus strains isolated from soil dwelling nematodes in Kenya. Access Microbiology 5 (5), acmi000531.v4 (2023)
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Bi, S.; Kargeti, M.; Colin, R.; Farke, N.; Link, H.; Sourjik, V.: Dynamic fluctuations in a bacterial metabolic network. Nature Communications 14 (1), 2173 (2023)
Journal Article
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