IMPRS Principles of Microbial Life

Publications

2024

Journal Article

Gao, Y.; Tan, D. S.; Girbig, M.; Hu, H.; Zhou, X.; Xie, Q.; Yeung, S. W.; Lee, K. S.; Ho, S. Y.; Cojocaru, V. et al.; Yan, J.; Hochberg, G. K. A.; de Mendoza, A.; Jauch, R.: The emergence of Sox and POU transcription factors predates the origins of animal stem cells. Nature Communications 15 (1), 9868 (2024)

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Defelipe, L. A.; Veith, K.; Burastero, O.; Kupriianova, T.; Bento, I.; Skruzny, M.; Kölbel, K.; Uetrecht, C.; Thuenauer, R.; García-Alai, M. M.: Subtleties in Clathrin heavy chain binding boxes provide selectivity among adaptor proteins of budding yeast. Nature Communications 15 (1), 9655 (2024)

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Čepaitė, R.; Klein, N.; Mikšys, A.; Camara-Wilpert, S.; Ragožius, V.; Benz, F.; Skorupskaitė, A.; Becker, H.; Žvejytė, G.; Steube, N. B. et al.; Hochberg, G. K. A.; Randau, L.; Pinilla-Redondo, R.; Malinauskaitė, L.; Pausch, P.: Structural variation of types IV-A1- and IV-A3-mediated CRISPR interference. Nature Communications 15 (1), 9306 (2024)

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Journal Article

Ivanov, B. S.; Bridges, H. R.; Jarman, O. D.; Hirst, J.: Structure of the turnover-ready state of an ancestral respiratory complex I. Nature Communications 15 (1), 9340 (2024)

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Wenk, S.; Rainaldi, V.; Schann, K.; He, H.; Bouzon, M.; Döring, V.; Lindner, S. N.; Bar-Even, A.: Evolution-assisted engineering of E. coli enables growth on formic acid at ambient CO₂ via the Serine Threonine Cycle. Metabolic Engineering (2024)

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Journal Article

Effert, J.; Westphalen, M.; Calderari, A.; Shi, Y.-M.; Elamri, I.; Najah, S.; Grün, P.; Li, Y.; Gruez, A.; Weissman, K. J. et al.; Bode, H. B.: Pyrrolizwilline, a unique bacterial alkaloid assembled by a nonribosomal peptide synthetase and non-enzymatic dimerization. Angewandte Chemie International Edition, e202411258 (2024)

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Journal Article

Lago-Maciel, A.; Soares, J. C.; Zarzycki, J.; Buchanan, C. J.; Reif-Trauttmansdorff, T.; Schmidt, F. V.; Lometto, S.; Paczia, N.; Schuller, J. M.; Hansen, D. F. et al.; Heller, G. T.; Prinz, S.; Hochberg, G. K. A.; Pierik, A. J.; Rebelein, J. G.: Methylthio-alkane reductases use nitrogenase metalloclusters for carbon-sulfur bond cleavage. bioRxiv: the preprint server for biology, 2024.10.19.619033 (2024)

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Preprint

Segura Munoz, R. R.; Sourjik, V.: Collective dynamics of Escherichia coli growth under near-lethal acid stress. bioRxiv: the preprint server for biology, 2024.10.17.618973 (2024)

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Journal Article

Lebon, C.; Grossmann, S.; Mann, G.; Lindner, F.; Koide, A.; Koide, S.; Diepold, A.; Hantschel, O.: Cytosolic delivery of monobodies using the bacterial type III secretion system inhibits oncogenic BCR: ABL1 signaling. Cell Communication and Signaling 22 (1), 500 (2024)

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Journal Article

He, H.; Gómez-Coronado, P. A.; Zarzycki, J.; Barthel, S.; Kahnt, J.; Claus, P.; Klein, M.; Klose, M.; de Crécy-Lagard, V.; Schindler, D. et al.; Paczia, N.; Glatter, T.; Erb, T. J.: Adaptive laboratory evolution recruits the promiscuity of succinate semialdehyde dehydrogenase to repair different metabolic deficiencies. Nature Communications 15 (1), 8898 (2024)

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Journal Article

Moreira Salgado, J. F.; Herve, V.; Vera, M. A. G.; Tokuda, G.; Brune, A.: Unveiling lignocellulolytic potential: a genomic exploration of bacterial lineages within the termite gut. Microbiome 12 (1), 201 (2024)

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Journal Article

Oklitschek, M.; Carreira, L. A. M.; Muratoğlu, M.; Søgaard-Andersen, L.; Treuner-Lange, A.: Combinatorial control of type IVa pili formation by the four polarized regulators MglA, SgmX, FrzS, and SopA. Journal of Bacteriology, e00108-24 (2024)

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Journal Article

Lometto, S.; Sparvoli, D.; Malengo, G.; Heimerl, T.; Hochberg, G. K. A.: The mitochondrial citrate synthase from Tetrahymena thermophila does not form an intermediate filament. European Journal of Protistology 96, 126121 (2024)

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Journal Article

Nan, J.; Peng, X.; Plümper, O.; ten Have, I. C.; Lu, J.-G.; Liu, Q.-B.; Li, S.-L.; Hu, Y.; Liu, Y.; Shen, Z. et al.; Yao, W.; Tao, R.; Preiner, M.; Luo, Y.: Unraveling abiotic organic synthesis pathways in the mafic crust of mid-ocean ridges. Proceedings of the National Academy of Sciences of the United States of America 121 (43), e2308684121 (2024)

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Journal Article

Sanchez-Londono, M.; Rust, S.; Hernández-Tamayo, R.; Gomes-Filho, J.; Thanbichler, M.; Randau, L.: Visualization of Type IV-A1 CRISPR-mediated repression of gene expression and plasmid replication. Nucleic Acids Research 52 (20), pp. 12592 - 12603 (2024)

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Journal Article

Xue, S.; Yi, X.; Peng, J.; Bak, F.; Zhang, L.; Duan, G.; Liesack, W.; Zhu, Y.: Fulvic acid enhances nitrogen fixation and retention in paddy soils through microbial-coupled carbon and nitrogen cycling. Environmental Science & Technology 58 (42), pp. 18777 - 18787 (2024)

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Review Article

Menard, J.; Diep, P.; Sheikh, F.; Escobar, A.; Dykstra, C. B.; Sajtovich, V. A.; Ahmadi, A.; Bodyreva, E.; Boucinha, A.; Chandrasekharan, S. et al.; Duan, J.; Emond, C.; Lu, T.; McLean, I.; Morse, L.; Serra, D.; Stancescu, A.; Suresh, S.; Ingalls, B. P.: Synthetic biology education and pedagogy: a review of evolving practices in a growing discipline. Frontiers in Education 9 (2024)

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Journal Article

Jiang, S.; Çelen, G.; Glatter, T.; Niederholtmeyer, H.; Yuan, J.: A cell-free system for functional studies of small membrane proteins. Journal of Biological Chemistry, 107850 (2024)

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Review Article

Freitag, J.; Stehlik, T.; Bange, G.: Mitochondria, peroxisomes and beyond—How dual targeting regulates organelle tethering. Contact 7 (2024)

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Journal Article

Bischoff, A.; Ortelt, J.; Dünschede, B.; Zegarra, V.; Bedrunka, P.; Bange, G.; Schünemann, D.: The role of chloroplast SRP54 domains and its C-terminal tail region in post- and co-translational protein transport in vivo. Journal of Experimental Botany 75 (18), pp. 5734 - 5749 (2024)

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Preprint

Zdimal, A. M.; Di Dio, G.; Liu, W.; Aftab, T.; Collins, T.; Colin, R.; Shrivastava, A.: Swarming bacteria exhibit developmental phase transitions to establish scattered colonies in new regions. bioRxiv: the preprint server for biology, 2024.09.24.614802 (2024)

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Preprint

Di Dio, G.; Colin, R.: Active segregation in binary mixtures under flow. bioRxiv: the preprint server for biology, 2024.09.20.614032 (2024)

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Journal Article

Barthel, S.; Brenker, L.; Diehl, C.; Bohra, N.; Giaveri, S.; Paczia, N.; Erb, T. J.: in vitro transcription-based biosensing of glycolate for prototyping of a complex enzyme cascade. Synthetic Biology, ysae013 (2024)

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Garg, S.; Hochberg, G. K. A.: A general substitution matrix for structural phylogenetics. bioRxiv: the preprint server for biology, 2024.09.19.613819 (2024)

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Journal Article

Scorza, L. C. T.; Zielinski, T.; Kalita, I.; Lepore, A.; El Karoui, M.; Millar, A. J.: Daily life in the Open Biologist's second job, as a Data Curator. Wellcome Open Research 9 (523) (2024)

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Journal Article

Pozhydaieva, N.; Billau, F. A.; Wolfram-Schauerte, M.; Ramírez Rojas, A. A.; Paczia, N.; Schindler, D.; Höfer, K.: Temporal epigenome modulation enables efficient bacteriophage engineering and functional analysis of phage DNA modifications. PLOS Genetics 20 (9), e1011384 (2024)

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Journal Article

Pöhl, S.; Giacomelli, G.; Meyer, F. M.; Kleeberg, V.; Cohen, E. J.; Biboy, J.; Rosum, J.; Glatter, T.; Vollmer, W.; van Teeseling et al.; F., M. C.; Heider, J.; Bramkamp, M.; Thanbichler, M.: An outer membrane porin-lipoprotein complex modulates elongasome movement to establish cell curvature in Rhodospirillum rubrum. Nature Communications 15 (1), 7616 (2024)

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Journal Article

Novák, J.; Treitli, S. C.; Füssy, Z.; Záhonová, K.; Hamplová, B.; Hrdá, Š.; Hampl, V.: V9 Hypervariable Region Metabarcoding Primers for Euglenozoa and Metamonada. Environmental DNA 6 (5), e70022 (2024)

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Journal Article

Touray, M.; Cimen, H.; Bode, E.; Bode, H. B.; Hazir, S.: Effects of Xenorhabdus and Photorhabdus bacterial metabolites on the ovipositional activity of Aedes albopictus. Journal of Pest Science 97 (4), pp. 2203 - 2215 (2024)

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Preprint

Seifert-Davila, W.; Chaban, A.; Baudin, F.; Girbig, M.; Hauptmann, L.; Hoffmann, T.; Duss, O.; Eustermann, S.; Muller, C. W.: Structural and kinetic insights into tRNA promoter engagement by yeast general transcription factor TFIIIC. bioRxiv: the preprint server for biology, 2024.08.28.610035 (2024)

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Journal Article

Su, L.; Huber, E. M.; Westphalen, M.; Gellner, J.; Bode, E.; Köbel, T.; Grün, P.; Alanjary, M. M.; Glatter, T.; Cirnski, K. et al.; Müller, R.; Schindler, D.; Groll, M.; Bode, H. B.: Isofunctional but Structurally Different Methyltransferases for Dithiolopyrrolone Diversification. Angewandte Chemie International Edition, e202410799 (2024)

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Review Article

Yilmaz Demirel, N.; Weber, M.; Höfer, K.: Bridging the gap: RNAylation conjugates RNAs to proteins. Biochimica et Biophysica Acta: BBA 1871 (8), 119826 (2024)

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Preprint

Orsi, E.; Schulz-Mirbach, H.; Cotton, C. A.R.; Satanowski, A.; Petri, H.; Arnold, S. L.; Grabarczyk, N.; Verbakel, R.; Jensen, K. S.; Donati, S. et al.; Paczia, N.; Glatter, T.; Küffner, A. M.; Chotel, T.; Schillmueller, F.; De Maria, A.; He, H.; Lindner, S. N.; Noor, E.; Bar-Even, A.; Erb, T. J.; Nikel, P. I.: Expanding the biotechnological scope of metabolic sensors through computation-aided designs. bioRxiv: the preprint server for biology, 2024.08.23.609350 (2024)

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Journal Article

Scarinci, G.; Ariens, J.-L.; Angelidou, G.; Schmidt, S.; Glatter, T.; Paczia, N.; Sourjik, V.: Enhanced metabolic entanglement emerges during the evolution of an interkingdom microbial community. Nature Communications 15 (1), 7238 (2024)

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Preprint

Wang, L.; Malengo, G.; Sanches Medeiros, A.; Chen, X.; Teteneva, N.; Sierra González, S.; Hammond, M.; Sourjik, V.: A toolbox of FRET-based c-di-GMP biosensors and its FRET-To-Sort application for genome-wide mapping of the second messenger regulatory network. bioRxiv: the preprint server for biology, 2024.08.21.609041 (2024)

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Journal Article

Brück, M.; Köbel, T. S.; Dittmar, S.; Ramírez Rojas, A. A.; Georg, J.; Berghoff, B. A.; Schindler, D.: A library-based approach allows systematic and rapid evaluation of seed region length and reveals design rules for synthetic bacterial small RNAs. iScience 27 (9), 110774 (2024)

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Journal Article

Arias-Rojas, A.; Arifah, A. Q.; Angelidou, G.; Alshaar, B.; Schombel, U.; Forest, E.; Frahm, D.; Brinkmann, V.; Paczia, N.; Beisel, C. L. et al.; Gisch, N.; Iatsenko, I.: MprF-mediated immune evasion is necessary for Lactiplantibacillus plantarum resilience in the Drosophila gut during inflammation. PLOS Pathogens 20 (8), e1012462 (2024)

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Journal Article

Präve, L.; Kuttenlochner, W.; Tabak, W. W.A.; Langer, C.; Kaiser, M.; Groll, M.; Bode, H. B.: Bioengineering of syrbactin megasynthetases for immunoproteasome inhibitor production. Chem (2024)

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Journal Article

Oehlmann, N. N.; Schmidt, F. V.; Herzog, M.; Goldman, A. L.; Rebelein, J. G.: The iron nitrogenase reduces carbon dioxide to formate and methane under physiological conditions: A route to feedstock chemicals. Science Advances 10 (33), eado7729 (2024)

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Journal Article

Aydin, E.; Schreiner, S.; Bohme, J.; Keil, B.; Weber, J.; Zunar, B.; Glatter, T.; Kilchert, C.: DEAD-box ATPase Dbp2 is the key enzyme in an mRNP assembly checkpoint at the 3'-end of genes and involved in the recycling of cleavage factors. Nature Communications 15, 6829 (2024)

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Journal Article

Brenzinger, K.; Glatter, T.; Hakobyan, A.; Meima-Franke, M.; Zweers, H.; Liesack, W.; Bodelier, P. L. E.: Exploring modes of microbial interactions with implications for methane cycling. FEMS Microbiology Ecology 100 (9), fiae112 (2024)

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Journal Article

Schulz-Mirbach, H.; Krüsemann, J. L.; Andreadaki, T.; Nerlich, J. N.; Mavrothalassiti, E.; Boecker, S.; Schneider, P.; Weresow, M.; Abdelwahab, O.; Paczia, N. et al.; Dronsella, B.; Erb, T. J.; Bar-Even, A.; Klamt, S.; Lindner, S. N.: Engineering new-to-nature biochemical conversions by combining fermentative metabolism with respiratory modules. Nature Communications 15 (1), 6725 (2024)

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Journal Article

Protasov, E.; Reeh, H.; Liu, P.; Poehlein, A.; Platt, K.; Heimerl, T.; Herve, V.; Daniel, R.; Brune, A.: Genome reduction in novel, obligately methyl-reducing Methanosarcinales isolated from arthropod guts (Methanolapillus gen. nov. and Methanimicrococcus). FEMS Microbiology Ecology 100 (9), fiae111 (2024)

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Journal Article

Cortés-Martín, A.; Buttimer, C.; Pozhydaieva, N.; Hille, F.; Shareefdeen, H.; Bolocan, A. S.; Draper, L. A.; Shkoporov , A. N.; Franz , C. M. A. P.; Höfer, K. et al.; Ross, P. R.; Hill, C.: Isolation and characterization of Septuagintavirus; a novel clade of Escherichia coli phages within the subfamily Vequintavirinae. Microbiology Spectrum 12 (9), e00592-24 (2024)

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Preprint

Lebon, C.; Grossmann, S.; Mann, G.; Lindner, F.; Koide, A.; Koide, S.; Diepold, A.; Hantschel, O.: Cytosolic delivery of monobodies using the bacterial type III secretion system inhibits oncogenic BCR::ABL1 signaling. Research Square, https://doi.org/10.21203/rs.3.rs-4705983/v1 (2024)

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Journal Article

Salgado, J. F. M.; Premkrishnan, B. N. V.; Oliveira, E. L.; Vettath, V. K.; Goh, F. G.; Hou, X.; Drautz-Moses, D. I.; Cai, Y.; Schuster, S. C.; Junqueira, A. C. M.: The dynamics of the midgut microbiome in aedes aegypti during digestion reveal putative symbionts. PNAS Nexus 3 (8), pgae317 (2024)

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Journal Article

Schlimpert, S.; Thanbichler, M.: Editorial overview: Rise of the bacterial nanomachines. Current Opinion in Microbiology 80, 102515 (2024)

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Journal Article

Sourjik, V.; Patil, K. R.: Editorial overview: Systems and synthetic biology of microbial cells and communities. Current Opinion in Microbiology 80, 102517 (2024)

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Journal Article

Peña-Diaz, P.; Braymer, J. J.; Vacek, V.; Zelená, M.; Lometto, S.; Mais, C.-N.; Hrdý, I.; Treitli, S. C.; Hochberg, G. K. A.; Py, B. et al.; Lill, R.; Hampl, V.: Characterization of the SUF FeS cluster synthesis machinery in the amitochondriate eukaryote Monocercomonoides exilis. Current Biology 34 (17), S0960-9822(24)00921-7, pp. 3855 - 3865.e7 (2024)

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Journal Article

Schann, K.; Bakker, J.; Boinot, M.; Kuschel, P.; He, H.; Nattermann, M.; Paczia, N.; Erb, T. J.; Bar-Even, A.; Wenk, S.: Design, construction and optimization of formaldehyde growth biosensors with broad application in biotechnology. Microbial Biotechnology 17 (7), e14527 (2024)

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Journal Article

Kim, Y.; Lee, S. H.; Gade, P.; Nattermann, M.; Maltseva, N.; Endres, M.; Chen, J.; Wichmann, P.; Hu, Y.; Marchal, D. G. et al.; Yoshikuni, Y.; Erb, T. J.; Gonzalez, R.; Michalska, K.; Joachimiak, A.: Revealing reaction intermediates in one-carbon elongation by thiamine diphosphate/CoA-dependent enzyme family. Communications Chemistry 7 (1) (2024)

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Journal Article

Böhm, C. V.; Inckemann, R.; Burgis, M.; Baumann, J.; Brinkmann, C. K.; Lipinska, K. E.; Gilles, S.; Freudigmann, J.; Seiler, V. N.; Clark, L. G. et al.; Jewett, M. C.; Voll, L. M.; Niederholtmeyer, H.: Chloroplast Cell-Free Systems from Different Plant Species as a Rapid Prototyping Platform. ACS Synthetic Biology 13 (8), pp. 2412 - 2424 (2024)

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Journal Article

Pérez-Burgos, M.; Herfurth, M.; Kaczmarczyk, A.; Harms, A.; Huber, K.; Jenal, U.; Glatter, T.; Søgaard-Andersen, L.: A deterministic, c-di-GMP-dependent program ensures the generation of phenotypically similar, symmetric daughter cells during cytokinesis. Nature Communications 15 (1), 6014 (2024)

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Journal Article

Giaveri, S.; Bohra, N.; Diehl, C.; Yang, H. Y.; Ballinger, M.; Paczia, N.; Glatter, T.; Erb, T. J.: Integrated translation and metabolism in a partially self-synthesizing biochemical network. Science 385 (6705), pp. 174 - 178 (2024)

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Preprint

Liu, Y.; Karmakar, R.; Steinchen, W.; Mukherjee, S.; Bange, G.; Schafer, L. V.; Thanbichler, M.: Membrane binding properties of the cytoskeletal protein bactofilin. bioRxiv: the preprint server for biology, 2024.06.14.599034 (2024)

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Journal Article

Bischoff, A.; Ortelt, J.; Dünschede, B.; Zegarra, V.; Bedrunka, P.; Bange, G.; Schünemann, D.: The role of chloroplast SRP54 domains and its C-terminal tail region in post- and cotranslational protein transport in vivo. Journal of Experimental Botany, erae293 (2024)

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Journal Article

Dornes, A.; Schmidt, L. M.; Mais, C.-N.; Hook, J. C.; Pané-Farré, J.; Kressler, D.; Thormann, K.; Bange, G.: Polar confinement of a macromolecular machine by an SRP-type GTPase. Nature Communications 15 (1), 5797 (2024)

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Journal Article

Gemmecker, Y.; Winiarska, A.; Hege, D.; Kahnt, J.; Seubert, A.; Szaleniec, M.; Heider, J.: A pH-dependent shift of redox cofactor specificity in a benzyl alcohol dehydrogenase of aromatoleum aromaticum EbN1. Applied Microbiology and Biotechnology 108, 410 (2024)

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Journal Article

Szymanski, E. A.; Schindler, D.: A (metaphorical) moment for RNA-based biotechnology?: Current metaphors for RNA limit development of and public communication about RNA-based technologies. EMBO Reports 25, pp. 3182 - 3186 (2024)

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Sendker, F. L.; Schlotthauer, T. J.; Mais, C.-N.; Lo, Y. K.; Girbig, M.; Bohn, S.; Heimerl, T.; Schindler, D.; Weinstein, A.; Metzger, B. P. et al.; Thornton, J. W.; Pillai, A.; Bange, G.; Schuller, J.; Hochberg, G. K. A.: Frequent transitions in self-assembly across the evolution of a central metabolic enzyme. bioRxiv: the preprint server for biology, 2024.07.05.602260 (2024)

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Journal Article

Schada v. Borzyskowsi, L.; Lucas, H.; Kremer, K.; Barthel, S.; Pommerenke, B.; Glatter, T.; Paczia, N.; Erhard, B.; Erb, T. J.: Multiple levels of transcriptional regulation control glycolate metabolism in Paracoccus denitrificans. mBio 15 (8), e0152424 (2024)

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Küffner, A. M.; Pommerenke, B.; Kley, L.; Ng, J. Z. Y.; Prinz, S.; Tinzl-Zechner, M.; Claus, P.; Paczia, N.; Zarzycki, J.; Hochberg, G. K. A. et al.; Erb, T. J.: Bottom-up reconstruction of minimal pyrenoids provides insights into the evolution and mechanisms of carbon concentration by EPYC1 proteins. bioRxiv: the preprint server for biology, 2024.06.28.601168 (2024)

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Ren, M.; Li, D.; Addison, H. G.; Noteborn, W. E. M.; Andeweg, E. H.; Glatter, T.; de Winde, J. H.; Rebelein, J. G.; Lamers, M. H.; Schada von Borzyskowski, L.: Promiscuous NAD-dependent dehydrogenases enable efficient bacterial growth on the PET monomer ethylene glycol. bioRxiv: the preprint server for biology, 2024.06.28.601223 (2024)

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Ermoli, F.; Spahn, C. K.; Glatter, T.; Diepold, A.: Yersinia actively downregulates type III secretion and adhesion at higher cell densities. bioRxiv, 2024.06.27.601021 (2024)

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Corrao, M.; He, H.; Liebermeister, W.; Noor, E.: A compact model of Escherichia coli core and biosynthetic metabolism. arXiv, arXiv:2406.16596 (2024)

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de Vries, S. T.; Koebel, T. S.; Sanal, A.; Schindler, D.: In- & Out-Cloning: Plasmid toolboxes for scarless transcription unit and modular Golden Gate acceptor plasmid assembly. bioRxiv: the preprint server for biology, 2024.06.22.600171 (2024)

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Ulgen Gokduman, F.; Yılmaz, S.; Bode, H. B.: Enhanced production of trans-cinnamic acid in Photorhabdus luminescens with homolog expression and deletion strategies. Journal of Applied Microbiology 135 (7), lxae149 (2024)

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Teteneva, N.; Sanches-Medeiros, A.; Sourjik, V.: Genome-wide screen of genetic determinants that govern Escherichia coli growth and persistence in lake water. The ISME Journal 18 (1), wrae096 (2024)

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Sanchez-Londono, M.; Rust, S.; Hernandez-Tamayo, R.; Gomes-Filho, J. V.; Thanbichler, M.; Randau, L.: Visualization of Type IV-A1 CRISPR-mediated repression of gene expression and plasmid replication. bioRxiv: the preprint server for biology, 2024.06.12.598411 (2024)

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Gehl, M.; Demmer, U.; Ermler, U.; Shima, S.: Mutational and structural studies of (βα)8-barrel fold methylene-tetrahydropterin reductases utilizing a common catalytic mechanism. Protein Science 33 (6), e5018 (2024)

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Defelipe, L. A.; Veith, K.; Burastero, O.; Kupriianova, T.; Bento, I.; Skruzny, M.; Köbel, K.; Uetrecht, C.; Thuenauer, R.; García-Alai, M. M.: Subtleties in clathrin heavy chain binding boxes provide selectivity among adaptor proteins of budding yeast. bioRxiv, 2024.05.30.596561 (2024)

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Krüsemann, J. L.; Lindner, S. N.: Bioproduction from methanol. Nature Catalysis 7 (5), pp. 472 - 474 (2024)

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Präve, L.; Seyfert, C. E.; Bozhüyük, K. A. J.; Racine, E.; Müller, R.; Bode, H. B.: Investigation of the Odilorhabdin biosynthetic gene cluster using NRPS engineering. Angewandte Chemie International Edition 63 (33), e202406389 (2024)

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Robinson, D. G.; Mallatt, J.; Peer, W. A.; Sourjik, V.; Taiz, L.: Cell consciousness: a dissenting opinion: The cellular basis of consciousness theory lacks empirical evidence for its claims that all cells have consciousness. EMBO Reports 25, pp. 2162 - 2167 (2024)

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Burt, M.; Angelidou, G.; Mais, C. N.; Preußer, C.; Glatter, T.; Heimerl, T.; Groß, R.; Serrania, J.; Boosarpu, G.; Pogge von Strandmann, E. et al.; Müller, J. A.; Bange, G.; Becker, A.; Lehmann, M.; Jonigk, D.; Neubert, L.; Freitag, H.; Paczia, N.; Schmeck, B.; Jung, A. L.: Lipid A in outer membrane vesicles shields bacteria from polymyxins. Journal of extracellular vesicles 13 (5), e12447 (2024)

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Ross, P. A.; Xu, W.; Jalomo-Khayrova, E.; Bange, G.; Gumerov, V. M.; Bradley , P. H.; Sourjik, V.; Zhulin , I. B.: Framework for exploring the sensory repertoire of the human gut microbiota. mBio 15 (6), e01039-24 (2024)

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Hirst, J.; Ivanov, B. S.; Bridges, H. R.; Jarman, O. D.: Structure of the turnover-ready state of an ancestral respiratory complex I. bioRxiv: the preprint server for biology, 2024.05.14.594153 (2024)

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Mies, U. S.; Hervé, V.; Kropp, T.; Platt, K.; David, S.-D.; Jan, Š.; Brune, A.: Genome reduction and horizontal gene transfer in the evolution of Endomicrobia—rise and fall of an intracellular symbiosis with termite gut flagellates. mBio 15 (6), e00826-24 (2024)

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Abdallah , R. Z.; Elbehery , A. H. A.; Ahmed, S. F.; Ouf, A.; Malash , M. N.; Liesack, W.; Siam, R.: Deciphering the functional and structural complexity of the Solar Lake flat mat microbial benthic communities. mSystems 9, e00095-24 (2024)

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Preprint

Inckemann, R.; Chotel, T.; Brinkmann, C. K.; Burgis, M.; Andreas, L.; Baumann, J.; Sharma, P.; Klose, M.; Barret, J.; Ries, F. et al.; Paczia, N.; Glatter, T.; Mackinder, L.; Willmund, F.; Erb, T. J.: Advancing chloroplast synthetic biology through high-throughput plastome engineering of Chlamydomonas reinhardtii. bioRxiv: the preprint server for biology, 2024.05.08.593163 (2024)

MPG.PuRe

Journal Article

Ulug, D.; Touray, M.; Hazal Gulsen, S.; Cimen, H.; Hazir, C.; Bode, H. B.; Hazir, S.: A taste of a toxin paradise: Xenorhabdus and Photorhabdus bacterial secondary metabolites against Aedes aegypti larvae and eggs. Journal of Invertebrate Pathology 205, 108126 (2024)

MPG.PuRe

Journal Article

Körner, D.; Schäfer, N. M.; Lagares Jr., A.; Birmes, L.; Oehlmann, N. N.; Addison, H. G.; Pöhl, S.; Thanbichler, M.; Rebelein, J. G.; Petersen, J. et al.; Becker, A.: Modular low-copy-number plasmid vectors for Rhodobacterales with extended host range in Alphaproteobacteria. ACS Synthetic Biology 13 (5), pp. 1537 - 1548 (2024)

MPG.PuRe

Journal Article

Ramming, L.; Stukenberg, D.; Sanchez Olmos, M. d. C.; Glatter, T.; Becker, A.; Schindler, D.: Rationally designed chromosome fusion does not prevent rapid growth of Vibrio natriegens. Communications Biology 7 (1), 519 (2024)

MPG.PuRe

Preprint

Sepúlveda, A. C.; Speth, D. R.; Kerl, C.; Doherty-Weason, D.; Vignale, F. A.; Santha, K.; Mohr, W.; Chennu, A.; Merz, E.; Beer, D. et al.; Farias, M. E.; Klatt, J. M.: The interplay between light, arsenic and H₂O₂ controls oxygenic photosynthesis in a Precambrian analog cyanobacterial mat. bioRxiv: the preprint server for biology, 2024.04.27.591451 (2024)

MPG.PuRe

Preprint

Barthel, S.; Brenker, L.; Diehl, C.; Bohra, N.; Giaveri, S.; Paczia, N.; Erb, T. J.: In vitro transcription-based biosensing of glycolate for prototyping of a complex enzyme cascade. bioRxiv: the preprint server for biology, 2024.04.26.591264 (2024)

MPG.PuRe

Preprint

Brueck, M.; Koebel, T. S.; Dittmar, S.; Ramírez Rojas, A. A.; Georg, J.; Berghoff, B. A.; Schindler, D.: A library-based approach allows systematic and rapid evaluation of seed region length and reveals design rules for synthetic bacterial small RNAs. bioRxiv: the preprint server for biology, 2024.04.24.590872 (2024)

MPG.PuRe

Preprint

Bischoff, A.; Ortelt, J.; Duenschede, B.; Zegarra, V.; Bedrunka, P.; Bange, G.; Schünemann, D.: The role of chloroplast SRP54 domains and its C-terminal tail region in post- and cotranslational protein transport in vivo. bioRxiv: the preprint server for biology, 2024.04.21.590438 (2024)

MPG.PuRe

Preprint

Pérez-López, M. I.; Lubrano, P.; Angelidou, G.; Glatter, T.; Paczia, N.; Link, H.; Sourjik, V.: The SPFH complex HflK-HflC regulates aerobic respiration in bacteria. bioRxiv: the preprint server for biology, 2024.04.21.590321 (2024)

MPG.PuRe

Preprint

Lazaridi, S.; Yuan, J.; Lemmin, T.: Atomic insights into the signaling landscape of E. coli PhoQ Histidine Kinase from Molecular Dynamics simulations. bioRxiv: the preprint server for biology, 2024.04.19.590235 (2024)

MPG.PuRe

Preprint

Jiang, S.; Celen, G.; Glatter, T.; Niederholtmeyer, H.; Yuan, J.: A cell-free system for functional studies of small membrane proteins. bioRxiv: the preprint server for biology, 2023.12.22.573026 (2024)

MPG.PuRe

Journal Article

Treuner-Lange, A.; Zheng, W.; Viljoen, A.; Lindow, S.; Herfurth, M.; Dufrêne, Y. F.; Søgaard-Andersen, L.; Egelman, E. H.: Tight-packing of large pilin subunits provides distinct structural and mechanical properties for the Myxococcus xanthus type IVa pilus. Proceedings of the National Academy of Sciences of the United States of America 121 (17), e2321989121 (2024)

MPG.PuRe

Journal Article

Touray, M.; Ulug, D.; Gulsen, S. H.; Cimen, H.; Hazir, C.; Bode, H. B.; Hazir, S.: Natural products from Xenorhabdus and Photorhabdus show promise as biolarvicides against Aedes albopictus. Pest Management Science 80 (9), pp. 4231 - 4242 (2024)

MPG.PuRe

Journal Article

Lindeboom, T. A.; Sanchez Olmos, M. d. C.; Schulz, K.; Brinkmann, C. K.; Ramírez Rojas, A. A.; Hochrein, L.; Schindler, D.: An optimized genotyping workflow for identifying highly SCRaMbLEd synthetic yeasts. ACS Synthetic Biology 13 (4), pp. 1116 - 1127 (2024)

MPG.PuRe

Journal Article

Sendker, F. L.; Lo, Y. K.; Heimerl, T.; Bohn, S.; Persson, L. J.; Mais, C.-N.; Sadowska, W.; Paczia, N.; Nußbaum, E.; del Carmen Sánchez Olmos, M. et al.; Forchhammer, K.; Schindler, D.; Erb, T. J.; Benesch, J. L. P.; Marklund, E. G.; Bange, G.; Schuller, J. M.; Hochberg, G. K. A.: Emergence of fractal geometries in the evolution of a metabolic enzyme. Nature 628 (8009), pp. 894 - 900 (2024)

MPG.PuRe

Journal Article

Pisarz, F.; Glatter, T.; Süss, D.-T. M.; Heermann, R.; Regaiolo, A.: The Type VI secretion systems of the insect pathogen Photorhabdus luminescens are involved in interbacterial competition, motility and secondary metabolism. The Microbe 3, 100067 (2024)

MPG.PuRe

Journal Article

Espada Burriel, S.; Colin, R.: Active density pattern formation in bacterial binary mixtures. PRX Life 2 (2), 023002 (2024)

MPG.PuRe

Preprint

Wolfram-Schauerte, M.; Moskalchuk, A.; Pozhydaieva, N.; Ramírez Rojas, A. A.; Schindler, D.; Kaiser, S.; Paczia, N.; Höfer, K.: T4 phage RNA is NAD-capped and alters the NAD-cap epitranscriptome of Escherichia coli during infection through a phage-encoded decapping enzyme. bioRxiv: the preprint server for biology, 2024.04.04.588121 (2024)

MPG.PuRe

Preprint

Dornes, A.; Schmidt, L. M.; Mais, C.-N.; Hook, J. C.; Pané-Farré, J.; Kressler, D.; Thormann, K.; Bange, G.: Polar confinement of a macromolecular machine by an SRP-type GTPase. bioRxiv: the preprint server for biology, 2024.04.02.587688 (2024)

MPG.PuRe

Journal Article

Rill, A.; Zhao, L.; Bode, H. B.: Genetic toolbox for Photorhabdus and Xenorhabdus: pSEVA based heterologous expression systems and CRISPR/Cpf1 based genome editing for rapid natural product profiling. Microbial Cell Factories 23, 98 (2024)

MPG.PuRe