Publications

2024
Journal Article
Oh, Z. G.; Robison, T. A.; Loh, D. H.; Ang, W. S. L.; Ng, J. Z. Y.; Li, F.-W.; Gunn, L. H.: Unique biogenesis and kinetics of hornwort Rubiscos revealed by synthetic biology systems. Molecular Plant (2024)
Journal Article
Zhang, X.; Liu, C.; Gao, Y.; Liu, L.; Zhang, H.: The canalization in domesticated yeast: Metabolic traits develop robustness against Hsp90 stress during the evolutionary process. Green Carbon (2024)
Preprint
Blöcher, L. P.; Schwabe, J.; Glatter, T.; Søgaard-Andersen, L.: Identification of EcpK, a bacterial tyrosine pseudokinase important for exopolysaccharide biosynthesis in Myxococcus xanthus. bioRxiv: the preprint server for biology, 2024.11.26.625375 (2024)
Journal Article
Schulz-Mirbach, H.; Wichmann, P.; Satanowski, A.; Meusel, H.; Wu, T.; Nattermann, M.; Burgener, S.; Paczia, N.; Bar-Even, A.; Erb, T. J.: New-to-nature CO2-dependent acetyl-CoA assimilation enabled by an engineered B12-dependent acyl-CoA mutase. Nature Communications 15, 10235 (2024)
Journal Article
Schulz, L.; Zarzycki, J.; Steinchen, W.; Hochberg, G. K. A.; Erb, T. J.: Layered entrenchment maintains essentiality in the evolution of Form I Rubisco complexes. The EMBO Journal, pp. 1 - 12 (2024)
Journal Article
Gao, Y.; Tan, D. S.; Girbig, M.; Hu, H.; Zhou, X.; Xie, Q.; Yeung, S. W.; Lee, K. S.; Ho, S. Y.; Cojocaru, V. et al.; Yan, J.; Hochberg, G. K. A.; de Mendoza, A.; Jauch, R.: The emergence of Sox and POU transcription factors predates the origins of animal stem cells. Nature Communications 15 (1), 9868 (2024)
Journal Article
de Vries, S. T.; Köbel, T. S.; Sanal, A.; Schindler, D.: In- & Out-Cloning: plasmid toolboxes for scarless transcription unit and modular Golden Gate acceptor plasmid assembly. Synthetic Biology 9 (1), ysae016 (2024)
Journal Article
Defelipe, L. A.; Veith, K.; Burastero, O.; Kupriianova, T.; Bento, I.; Skruzny, M.; Kölbel, K.; Uetrecht, C.; Thuenauer, R.; García-Alai, M. M.: Subtleties in Clathrin heavy chain binding boxes provide selectivity among adaptor proteins of budding yeast. Nature Communications 15 (1), 9655 (2024)
Journal Article
Bozhüyük, K. A. J.; Präve, L.; Kegler, C.; Schenk, L.; Kaiser, S.; Schelhas, C. S.; Shi, Y.-N.; Kuttenlochner, W.; Schreiber, M.; Kandler, J. et al.; Alanjary, M.; Mohiuddin, T. M.; Groll, M.; Hochberg, G. K. A.; Bode, H. B.: Evolution-inspired engineering of nonribosomal peptide synthetases. Science 383 (6689), eadg4320 (2024)
Journal Article
Kargeti, M.; Borah, A.: Metabolic state of bacterial cells: Deciphered through a simple mathematical model. IFAC-PapersOnLine 58 (24), pp. 211 - 215 (2024)
Journal Article
Čepaitė, R.; Klein, N.; Mikšys, A.; Camara-Wilpert, S.; Ragožius, V.; Benz, F.; Skorupskaitė, A.; Becker, H.; Žvejytė, G.; Steube, N. B. et al.; Hochberg, G. K. A.; Randau, L.; Pinilla-Redondo, R.; Malinauskaitė, L.; Pausch, P.: Structural variation of types IV-A1- and IV-A3-mediated CRISPR interference. Nature Communications 15 (1), 9306 (2024)
Journal Article
Ivanov, B. S.; Bridges, H. R.; Jarman, O. D.; Hirst, J.: Structure of the turnover-ready state of an ancestral respiratory complex I. Nature Communications 15 (1), 9340 (2024)
Journal Article
Wenk, S.; Rainaldi, V.; Schann, K.; He, H.; Bouzon, M.; Döring, V.; Lindner, S. N.; Bar-Even, A.: Evolution-assisted engineering of E. coli enables growth on formic acid at ambient CO2 via the Serine Threonine Cycle. Metabolic Engineering (2024)
Journal Article
Effert, J.; Westphalen, M.; Calderari, A.; Shi, Y.-M.; Elamri, I.; Najah, S.; Grün, P.; Li, Y.; Gruez, A.; Weissman, K. J. et al.; Bode, H. B.: Pyrrolizwilline, a unique bacterial alkaloid assembled by a nonribosomal peptide synthetase and non-enzymatic dimerization. Angewandte Chemie International Edition, e202411258 (2024)
Journal Article
Lago-Maciel, A.; Soares, J. C.; Zarzycki, J.; Buchanan, C. J.; Reif-Trauttmansdorff, T.; Schmidt, F. V.; Lometto, S.; Paczia, N.; Schuller, J. M.; Hansen, D. F. et al.; Heller, G. T.; Prinz, S.; Hochberg, G. K. A.; Pierik, A. J.; Rebelein, J. G.: Methylthio-alkane reductases use nitrogenase metalloclusters for carbon-sulfur bond cleavage. bioRxiv: the preprint server for biology, 2024.10.19.619033 (2024)
Preprint
Segura Munoz, R. R.; Sourjik, V.: Collective dynamics of Escherichia coli growth under near-lethal acid stress. bioRxiv: the preprint server for biology, 2024.10.17.618973 (2024)
Journal Article
Lebon, C.; Grossmann, S.; Mann, G.; Lindner, F.; Koide, A.; Koide, S.; Diepold, A.; Hantschel, O.: Cytosolic delivery of monobodies using the bacterial type III secretion system inhibits oncogenic BCR: ABL1 signaling. Cell Communication and Signaling 22 (1), 500 (2024)
Journal Article
He, H.; Gómez-Coronado, P. A.; Zarzycki, J.; Barthel, S.; Kahnt, J.; Claus, P.; Klein, M.; Klose, M.; de Crécy-Lagard, V.; Schindler, D. et al.; Paczia, N.; Glatter, T.; Erb, T. J.: Adaptive laboratory evolution recruits the promiscuity of succinate semialdehyde dehydrogenase to repair different metabolic deficiencies. Nature Communications 15 (1), 8898 (2024)
Journal Article
Moreira Salgado, J. F.; Herve, V.; Vera, M. A. G.; Tokuda, G.; Brune, A.: Unveiling lignocellulolytic potential: a genomic exploration of bacterial lineages within the termite gut. Microbiome 12 (1), 201 (2024)
Journal Article
Oklitschek, M.; Carreira, L. A. M.; Muratoğlu, M.; Søgaard-Andersen, L.; Treuner-Lange, A.: Combinatorial control of type IVa pili formation by the four polarized regulators MglA, SgmX, FrzS, and SopA. Journal of Bacteriology 206 (11), e00108-24 (2024)
Journal Article
Lometto, S.; Sparvoli, D.; Malengo, G.; Heimerl, T.; Hochberg, G. K. A.: The mitochondrial citrate synthase from Tetrahymena thermophila does not form an intermediate filament. European Journal of Protistology 96, 126121 (2024)
Journal Article
Nan, J.; Peng, X.; Plümper, O.; ten Have, I. C.; Lu, J.-G.; Liu, Q.-B.; Li, S.-L.; Hu, Y.; Liu, Y.; Shen, Z. et al.; Yao, W.; Tao, R.; Preiner, M.; Luo, Y.: Unraveling abiotic organic synthesis pathways in the mafic crust of mid-ocean ridges. Proceedings of the National Academy of Sciences of the United States of America 121 (43), e2308684121 (2024)
Journal Article
Sanchez-Londono, M.; Rust, S.; Hernández-Tamayo, R.; Gomes-Filho, J.; Thanbichler, M.; Randau, L.: Visualization of Type IV-A1 CRISPR-mediated repression of gene expression and plasmid replication. Nucleic Acids Research 52 (20), pp. 12592 - 12603 (2024)
Journal Article
Xue, S.; Yi, X.; Peng, J.; Bak, F.; Zhang, L.; Duan, G.; Liesack, W.; Zhu, Y.: Fulvic acid enhances nitrogen fixation and retention in paddy soils through microbial-coupled carbon and nitrogen cycling. Environmental Science & Technology 58 (42), pp. 18777 - 18787 (2024)
Review Article
Menard, J.; Diep, P.; Sheikh, F.; Escobar, A.; Dykstra, C. B.; Sajtovich, V. A.; Ahmadi, A.; Bodyreva, E.; Boucinha, A.; Chandrasekharan, S. et al.; Duan, J.; Emond, C.; Lu, T.; McLean, I.; Morse, L.; Serra, D.; Stancescu, A.; Suresh, S.; Ingalls, B. P.: Synthetic biology education and pedagogy: a review of evolving practices in a growing discipline. Frontiers in Education 9 (2024)
Journal Article
Jiang, S.; Çelen, G.; Glatter, T.; Niederholtmeyer, H.; Yuan, J.: A cell-free system for functional studies of small membrane proteins. Journal of Biological Chemistry, 107850 (2024)
Review Article
Freitag, J.; Stehlik, T.; Bange, G.: Mitochondria, peroxisomes and beyond—How dual targeting regulates organelle tethering. Contact 7 (2024)
Journal Article
Bischoff, A.; Ortelt, J.; Dünschede, B.; Zegarra, V.; Bedrunka, P.; Bange, G.; Schünemann, D.: The role of chloroplast SRP54 domains and its C-terminal tail region in post- and co-translational protein transport in vivo. Journal of Experimental Botany 75 (18), pp. 5734 - 5749 (2024)
Preprint
Zdimal, A. M.; Di Dio, G.; Liu, W.; Aftab, T.; Collins, T.; Colin, R.; Shrivastava, A.: Swarming bacteria exhibit developmental phase transitions to establish scattered colonies in new regions. bioRxiv: the preprint server for biology, 2024.09.24.614802 (2024)
Preprint
Di Dio, G.; Colin, R.: Active segregation in binary mixtures under flow. bioRxiv: the preprint server for biology, 2024.09.20.614032 (2024)
Journal Article
Barthel, S.; Brenker, L.; Diehl, C.; Bohra, N.; Giaveri, S.; Paczia, N.; Erb, T. J.: in vitro transcription-based biosensing of glycolate for prototyping of a complex enzyme cascade. Synthetic Biology, ysae013 (2024)
Journal Article
Garg, S.; Hochberg, G. K. A.: A general substitution matrix for structural phylogenetics. bioRxiv: the preprint server for biology, 2024.09.19.613819 (2024)
Journal Article
Scorza, L. C. T.; Zielinski, T.; Kalita, I.; Lepore, A.; El Karoui, M.; Millar, A. J.: Daily life in the Open Biologist's second job, as a Data Curator. Wellcome Open Research 9 (523) (2024)
Journal Article
Pozhydaieva, N.; Billau, F. A.; Wolfram-Schauerte, M.; Ramírez Rojas, A. A.; Paczia, N.; Schindler, D.; Höfer, K.: Temporal epigenome modulation enables efficient bacteriophage engineering and functional analysis of phage DNA modifications. PLOS Genetics 20 (9), e1011384 (2024)
Journal Article
Pöhl, S.; Giacomelli, G.; Meyer, F. M.; Kleeberg, V.; Cohen, E. J.; Biboy, J.; Rosum, J.; Glatter, T.; Vollmer, W.; van Teeseling et al.; F., M. C.; Heider, J.; Bramkamp, M.; Thanbichler, M.: An outer membrane porin-lipoprotein complex modulates elongasome movement to establish cell curvature in Rhodospirillum rubrum. Nature Communications 15 (1), 7616 (2024)
Journal Article
Novák, J.; Treitli, S. C.; Füssy, Z.; Záhonová, K.; Hamplová, B.; Hrdá, Š.; Hampl, V.: V9 Hypervariable Region Metabarcoding Primers for Euglenozoa and Metamonada. Environmental DNA 6 (5), e70022 (2024)
Journal Article
Touray, M.; Cimen, H.; Bode, E.; Bode, H. B.; Hazir, S.: Effects of Xenorhabdus and Photorhabdus bacterial metabolites on the ovipositional activity of Aedes albopictus. Journal of Pest Science 97 (4), pp. 2203 - 2215 (2024)
Preprint
Seifert-Davila, W.; Chaban, A.; Baudin, F.; Girbig, M.; Hauptmann, L.; Hoffmann, T.; Duss, O.; Eustermann, S.; Muller, C. W.: Structural and kinetic insights into tRNA promoter engagement by yeast general transcription factor TFIIIC. bioRxiv: the preprint server for biology, 2024.08.28.610035 (2024)
Journal Article
Su, L.; Huber, E. M.; Westphalen, M.; Gellner, J.; Bode, E.; Köbel, T.; Grün, P.; Alanjary, M. M.; Glatter, T.; Cirnski, K. et al.; Müller, R.; Schindler, D.; Groll, M.; Bode, H. B.: Isofunctional but structurally different methyltransferases for dithiolopyrrolone diversification. Angewandte Chemie International Edition, e202410799 (2024)
Review Article
Yilmaz Demirel, N.; Weber, M.; Höfer, K.: Bridging the gap: RNAylation conjugates RNAs to proteins. Biochimica et Biophysica Acta: BBA 1871 (8), 119826 (2024)
Preprint
Orsi, E.; Schulz-Mirbach, H.; Cotton, C. A.R.; Satanowski, A.; Petri, H.; Arnold, S. L.; Grabarczyk, N.; Verbakel, R.; Jensen, K. S.; Donati, S. et al.; Paczia, N.; Glatter, T.; Küffner, A. M.; Chotel, T.; Schillmueller, F.; De Maria, A.; He, H.; Lindner, S. N.; Noor, E.; Bar-Even, A.; Erb, T. J.; Nikel, P. I.: Expanding the biotechnological scope of metabolic sensors through computation-aided designs. bioRxiv: the preprint server for biology, 2024.08.23.609350 (2024)
Journal Article
Scarinci, G.; Ariens, J.-L.; Angelidou, G.; Schmidt, S.; Glatter, T.; Paczia, N.; Sourjik, V.: Enhanced metabolic entanglement emerges during the evolution of an interkingdom microbial community. Nature Communications 15 (1), 7238 (2024)
Preprint
Wang, L.; Malengo, G.; Sanches Medeiros, A.; Chen, X.; Teteneva, N.; Sierra González, S.; Hammond, M.; Sourjik, V.: A toolbox of FRET-based c-di-GMP biosensors and its FRET-To-Sort application for genome-wide mapping of the second messenger regulatory network. bioRxiv: the preprint server for biology, 2024.08.21.609041 (2024)
Journal Article
Brück, M.; Köbel, T. S.; Dittmar, S.; Ramírez Rojas, A. A.; Georg, J.; Berghoff, B. A.; Schindler, D.: A library-based approach allows systematic and rapid evaluation of seed region length and reveals design rules for synthetic bacterial small RNAs. iScience 27 (9), 110774 (2024)
Journal Article
Arias-Rojas, A.; Arifah, A. Q.; Angelidou, G.; Alshaar, B.; Schombel, U.; Forest, E.; Frahm, D.; Brinkmann, V.; Paczia, N.; Beisel, C. L. et al.; Gisch, N.; Iatsenko, I.: MprF-mediated immune evasion is necessary for Lactiplantibacillus plantarum resilience in the Drosophila gut during inflammation. PLOS Pathogens 20 (8), e1012462 (2024)
Journal Article
Präve, L.; Kuttenlochner, W.; Tabak, W. W.A.; Langer, C.; Kaiser, M.; Groll, M.; Bode, H. B.: Bioengineering of syrbactin megasynthetases for immunoproteasome inhibitor production. Chem (2024)
Journal Article
Oehlmann, N. N.; Schmidt, F. V.; Herzog, M.; Goldman, A. L.; Rebelein, J. G.: The iron nitrogenase reduces carbon dioxide to formate and methane under physiological conditions: A route to feedstock chemicals. Science Advances 10 (33), eado7729 (2024)
Journal Article
Aydin, E.; Schreiner, S.; Bohme, J.; Keil, B.; Weber, J.; Zunar, B.; Glatter, T.; Kilchert, C.: DEAD-box ATPase Dbp2 is the key enzyme in an mRNP assembly checkpoint at the 3'-end of genes and involved in the recycling of cleavage factors. Nature Communications 15, 6829 (2024)
Journal Article
Brenzinger, K.; Glatter, T.; Hakobyan, A.; Meima-Franke, M.; Zweers, H.; Liesack, W.; Bodelier, P. L. E.: Exploring modes of microbial interactions with implications for methane cycling. FEMS Microbiology Ecology 100 (9), fiae112 (2024)
Journal Article
Schulz-Mirbach, H.; Krüsemann, J. L.; Andreadaki, T.; Nerlich, J. N.; Mavrothalassiti, E.; Boecker, S.; Schneider, P.; Weresow, M.; Abdelwahab, O.; Paczia, N. et al.; Dronsella, B.; Erb, T. J.; Bar-Even, A.; Klamt, S.; Lindner, S. N.: Engineering new-to-nature biochemical conversions by combining fermentative metabolism with respiratory modules. Nature Communications 15 (1), 6725 (2024)
Journal Article
Protasov, E.; Reeh, H.; Liu, P.; Poehlein, A.; Platt, K.; Heimerl, T.; Herve, V.; Daniel, R.; Brune, A.: Genome reduction in novel, obligately methyl-reducing Methanosarcinales isolated from arthropod guts (Methanolapillus gen. nov. and Methanimicrococcus). FEMS Microbiology Ecology 100 (9), fiae111 (2024)
Journal Article
Cortés-Martín, A.; Buttimer, C.; Pozhydaieva, N.; Hille, F.; Shareefdeen, H.; Bolocan, A. S.; Draper, L. A.; Shkoporov , A. N.; Franz , C. M. A. P.; Höfer, K. et al.; Ross, P. R.; Hill, C.: Isolation and characterization of Septuagintavirus; a novel clade of Escherichia coli phages within the subfamily Vequintavirinae. Microbiology Spectrum 12 (9), e00592-24 (2024)
Preprint
Lebon, C.; Grossmann, S.; Mann, G.; Lindner, F.; Koide, A.; Koide, S.; Diepold, A.; Hantschel, O.: Cytosolic delivery of monobodies using the bacterial type III secretion system inhibits oncogenic BCR::ABL1 signaling. Research Square, https://doi.org/10.21203/rs.3.rs-4705983/v1 (2024)
Journal Article
Salgado, J. F. M.; Premkrishnan, B. N. V.; Oliveira, E. L.; Vettath, V. K.; Goh, F. G.; Hou, X.; Drautz-Moses, D. I.; Cai, Y.; Schuster, S. C.; Junqueira, A. C. M.: The dynamics of the midgut microbiome in aedes aegypti during digestion reveal putative symbionts. PNAS Nexus 3 (8), pgae317 (2024)
Journal Article
Schlimpert, S.; Thanbichler, M.: Editorial overview: Rise of the bacterial nanomachines. Current Opinion in Microbiology 80, 102515 (2024)
Journal Article
Sourjik, V.; Patil, K. R.: Editorial overview: Systems and synthetic biology of microbial cells and communities. Current Opinion in Microbiology 80, 102517 (2024)
Journal Article
Peña-Diaz, P.; Braymer, J. J.; Vacek, V.; Zelená, M.; Lometto, S.; Mais, C.-N.; Hrdý, I.; Treitli, S. C.; Hochberg, G. K. A.; Py, B. et al.; Lill, R.; Hampl, V.: Characterization of the SUF FeS cluster synthesis machinery in the amitochondriate eukaryote Monocercomonoides exilis. Current Biology 34 (17), S0960-9822(24)00921-7, pp. 3855 - 3865.e7 (2024)
Journal Article
Schann, K.; Bakker, J.; Boinot, M.; Kuschel, P.; He, H.; Nattermann, M.; Paczia, N.; Erb, T. J.; Bar-Even, A.; Wenk, S.: Design, construction and optimization of formaldehyde growth biosensors with broad application in biotechnology. Microbial Biotechnology 17 (7), e14527 (2024)
Journal Article
Kim, Y.; Lee, S. H.; Gade, P.; Nattermann, M.; Maltseva, N.; Endres, M.; Chen, J.; Wichmann, P.; Hu, Y.; Marchal, D. G. et al.; Yoshikuni, Y.; Erb, T. J.; Gonzalez, R.; Michalska, K.; Joachimiak, A.: Revealing reaction intermediates in one-carbon elongation by thiamine diphosphate/CoA-dependent enzyme family. Communications Chemistry 7 (1) (2024)
Journal Article
Böhm, C. V.; Inckemann, R.; Burgis, M.; Baumann, J.; Brinkmann, C. K.; Lipinska, K. E.; Gilles, S.; Freudigmann, J.; Seiler, V. N.; Clark, L. G. et al.; Jewett, M. C.; Voll, L. M.; Niederholtmeyer, H.: Chloroplast Cell-Free Systems from Different Plant Species as a Rapid Prototyping Platform. ACS Synthetic Biology 13 (8), pp. 2412 - 2424 (2024)
Journal Article
Pérez-Burgos, M.; Herfurth, M.; Kaczmarczyk, A.; Harms, A.; Huber, K.; Jenal, U.; Glatter, T.; Søgaard-Andersen, L.: A deterministic, c-di-GMP-dependent program ensures the generation of phenotypically similar, symmetric daughter cells during cytokinesis. Nature Communications 15 (1), 6014 (2024)
Journal Article
Giaveri, S.; Bohra, N.; Diehl, C.; Yang, H. Y.; Ballinger, M.; Paczia, N.; Glatter, T.; Erb, T. J.: Integrated translation and metabolism in a partially self-synthesizing biochemical network. Science 385 (6705), pp. 174 - 178 (2024)
Preprint
Liu, Y.; Karmakar, R.; Steinchen, W.; Mukherjee, S.; Bange, G.; Schafer, L. V.; Thanbichler, M.: Membrane binding properties of the cytoskeletal protein bactofilin. bioRxiv: the preprint server for biology, 2024.06.14.599034 (2024)
Journal Article
Bischoff, A.; Ortelt, J.; Dünschede, B.; Zegarra, V.; Bedrunka, P.; Bange, G.; Schünemann, D.: The role of chloroplast SRP54 domains and its C-terminal tail region in post- and cotranslational protein transport in vivo. Journal of Experimental Botany, erae293 (2024)
Journal Article
Dornes, A.; Schmidt, L. M.; Mais, C.-N.; Hook, J. C.; Pané-Farré, J.; Kressler, D.; Thormann, K.; Bange, G.: Polar confinement of a macromolecular machine by an SRP-type GTPase. Nature Communications 15 (1), 5797 (2024)
Journal Article
Gemmecker, Y.; Winiarska, A.; Hege, D.; Kahnt, J.; Seubert, A.; Szaleniec, M.; Heider, J.: A pH-dependent shift of redox cofactor specificity in a benzyl alcohol dehydrogenase of aromatoleum aromaticum EbN1. Applied Microbiology and Biotechnology 108, 410 (2024)
Journal Article
Szymanski, E. A.; Schindler, D.: A (metaphorical) moment for RNA-based biotechnology?: Current metaphors for RNA limit development of and public communication about RNA-based technologies. EMBO Reports 25, pp. 3182 - 3186 (2024)
Preprint
Sendker, F. L.; Schlotthauer, T. J.; Mais, C.-N.; Lo, Y. K.; Girbig, M.; Bohn, S.; Heimerl, T.; Schindler, D.; Weinstein, A.; Metzger, B. P. et al.; Thornton, J. W.; Pillai, A.; Bange, G.; Schuller, J.; Hochberg, G. K. A.: Frequent transitions in self-assembly across the evolution of a central metabolic enzyme. bioRxiv: the preprint server for biology, 2024.07.05.602260 (2024)
Journal Article
Schada v. Borzyskowsi, L.; Lucas, H.; Kremer, K.; Barthel, S.; Pommerenke, B.; Glatter, T.; Paczia, N.; Erhard, B.; Erb, T. J.: Multiple levels of transcriptional regulation control glycolate metabolism in Paracoccus denitrificans. mBio 15 (8), e0152424 (2024)
Preprint
Küffner, A. M.; Pommerenke, B.; Kley, L.; Ng, J. Z. Y.; Prinz, S.; Tinzl-Zechner, M.; Claus, P.; Paczia, N.; Zarzycki, J.; Hochberg, G. K. A. et al.; Erb, T. J.: Bottom-up reconstruction of minimal pyrenoids provides insights into the evolution and mechanisms of carbon concentration by EPYC1 proteins. bioRxiv: the preprint server for biology, 2024.06.28.601168 (2024)
Preprint
Ren, M.; Li, D.; Addison, H. G.; Noteborn, W. E. M.; Andeweg, E. H.; Glatter, T.; de Winde, J. H.; Rebelein, J. G.; Lamers, M. H.; Schada von Borzyskowski, L.: Promiscuous NAD-dependent dehydrogenases enable efficient bacterial growth on the PET monomer ethylene glycol. bioRxiv: the preprint server for biology, 2024.06.28.601223 (2024)
Preprint
Ermoli, F.; Spahn, C. K.; Glatter, T.; Diepold, A.: Yersinia actively downregulates type III secretion and adhesion at higher cell densities. bioRxiv, 2024.06.27.601021 (2024)
Preprint
Corrao, M.; He, H.; Liebermeister, W.; Noor, E.: A compact model of Escherichia coli core and biosynthetic metabolism. arXiv, arXiv:2406.16596 (2024)
Preprint
de Vries, S. T.; Koebel, T. S.; Sanal, A.; Schindler, D.: In- & Out-Cloning: Plasmid toolboxes for scarless transcription unit and modular Golden Gate acceptor plasmid assembly. bioRxiv: the preprint server for biology, 2024.06.22.600171 (2024)
Journal Article
Ulgen Gokduman, F.; Yılmaz, S.; Bode, H. B.: Enhanced production of trans-cinnamic acid in Photorhabdus luminescens with homolog expression and deletion strategies. Journal of Applied Microbiology 135 (7), lxae149 (2024)
Journal Article
Teteneva, N.; Sanches-Medeiros, A.; Sourjik, V.: Genome-wide screen of genetic determinants that govern Escherichia coli growth and persistence in lake water. The ISME Journal 18 (1), wrae096 (2024)
Preprint
Sanchez-Londono, M.; Rust, S.; Hernandez-Tamayo, R.; Gomes-Filho, J. V.; Thanbichler, M.; Randau, L.: Visualization of Type IV-A1 CRISPR-mediated repression of gene expression and plasmid replication. bioRxiv: the preprint server for biology, 2024.06.12.598411 (2024)
Journal Article
Gehl, M.; Demmer, U.; Ermler, U.; Shima, S.: Mutational and structural studies of (βα)8-barrel fold methylene-tetrahydropterin reductases utilizing a common catalytic mechanism. Protein Science 33 (6), e5018 (2024)
Journal Article
Defelipe, L. A.; Veith, K.; Burastero, O.; Kupriianova, T.; Bento, I.; Skruzny, M.; Köbel, K.; Uetrecht, C.; Thuenauer, R.; García-Alai, M. M.: Subtleties in clathrin heavy chain binding boxes provide selectivity among adaptor proteins of budding yeast. bioRxiv, 2024.05.30.596561 (2024)
Journal Article
Krüsemann, J. L.; Lindner, S. N.: Bioproduction from methanol. Nature Catalysis 7 (5), pp. 472 - 474 (2024)
Journal Article
Präve, L.; Seyfert, C. E.; Bozhüyük, K. A. J.; Racine, E.; Müller, R.; Bode, H. B.: Investigation of the Odilorhabdin biosynthetic gene cluster using NRPS engineering. Angewandte Chemie International Edition 63 (33), e202406389 (2024)
Journal Article
Robinson, D. G.; Mallatt, J.; Peer, W. A.; Sourjik, V.; Taiz, L.: Cell consciousness: a dissenting opinion: The cellular basis of consciousness theory lacks empirical evidence for its claims that all cells have consciousness. EMBO Reports 25, pp. 2162 - 2167 (2024)
Journal Article
Burt, M.; Angelidou, G.; Mais, C. N.; Preußer, C.; Glatter, T.; Heimerl, T.; Groß, R.; Serrania, J.; Boosarpu, G.; Pogge von Strandmann, E. et al.; Müller, J. A.; Bange, G.; Becker, A.; Lehmann, M.; Jonigk, D.; Neubert, L.; Freitag, H.; Paczia, N.; Schmeck, B.; Jung, A. L.: Lipid A in outer membrane vesicles shields bacteria from polymyxins. Journal of extracellular vesicles 13 (5), e12447 (2024)
Journal Article
Ross, P. A.; Xu, W.; Jalomo-Khayrova, E.; Bange, G.; Gumerov, V. M.; Bradley , P. H.; Sourjik, V.; Zhulin , I. B.: Framework for exploring the sensory repertoire of the human gut microbiota. mBio 15 (6), e01039-24 (2024)
Preprint
Hirst, J.; Ivanov, B. S.; Bridges, H. R.; Jarman, O. D.: Structure of the turnover-ready state of an ancestral respiratory complex I. bioRxiv: the preprint server for biology, 2024.05.14.594153 (2024)
Journal Article
Mies, U. S.; Hervé, V.; Kropp, T.; Platt, K.; David, S.-D.; Jan, Š.; Brune, A.: Genome reduction and horizontal gene transfer in the evolution of Endomicrobia—rise and fall of an intracellular symbiosis with termite gut flagellates. mBio 15 (6), e00826-24 (2024)
Journal Article
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