Publications of S. Shima

Warkentin, E.; Hagemeier, C. H.; Shima, S.; Thauer, R. K.; Ermler, U.: The structure of F₄₂₀-dependent methylenetetrahydromethanopterin dehydrogenase: a crystallographic 'superstructure' of the selenomethionine-labelled protein crystal structure. Acta Crystallographica Section D - Structural Biology 61, pp. 198 - 202 (2005)

Sakasegawa, S. I.; Hagemeier, C. H.; Thauer, R. K.; Essen, L. O.; Shima, S.: Structural and functional analysis of the gpsA gene product of Archaeoglobus fulgidus: A glycerol-3-phosphate dehydrogenase with an unusual NADP(+) preference. Protein Science 13 (12), pp. 3161 - 3171 (2004)

Lyon, E. J.; Shima, S.; Boecher, R.; Thauer, R. K.; Grevels, F. W.; Bill, E.; Roseboom, W.; Albracht, S. P. J.: Carbon monoxide as an intrinsic ligand to iron in the active site of the iron-sulfur-cluster-free hydrogenase H₂-Forming methylenetetrahydromethanopterin dehydrogenase as revealed by infrared spectroscopy. The Journal of Organic Chemistry 126 (43), pp. 14239 - 14248 (2004)

Seedorf, H.; Dreisbach, A.; Hedderich, R.; Shima, S.; Thauer, R. K.: F₄₂₀H₂ oxidase (FprA) from Methanobrevibacter arboriphilus, a coenzyme F₄₂₀-dependent enzyme involved in O₂ detoxification. Archives of Microbiology 182 (2-3), pp. 126 - 137 (2004)

Aufhammer, S. W.; Warkentin, E.; Berk, H.; Shima, S.; Thauer, R. K.; Ermler, U.: Coenzyme binding in F₄₂₀-dependent secondary alcohol dehydrogenase, a member of the bacterial luciferase family. Structure 12 (3), pp. 361 - 370 (2004)

Lyon, E. J.; Shima, S.; Buurman, G.; Chowdhuri, S.; Batschauer, A.; Steinbach, K.; Thauer, R. K.: UV-A/blue-light inactivation of the 'metal-free' hydrogenase (Hmd) from methanogenic archaea - The enzyme contains functional iron after all. European Journal of Biochemistry 271 (1), pp. 195 - 204 (2004)

Shima, S.; Lyon, E. J.; Sordel-Klippert, M. S.; Kauss, M.; Kahnt, J.; Thauer, R. K.; Steinbach, K.; Xie, X. L.; Verdier, L.; Griesinger, C.: The cofactor of the iron-sulfur cluster free hydrogenase Hmd: Structure of the light-inactivation product. Angewandte Chemie International Edition 43 (19), pp. 2547 - 2551 (2004)

Krüger, M.; Meyerdierks, A.; Glockner, F. O.; Amann, R.; Widdel, F.; Kube, M.; Reinhardt, R.; Kahnt, R.; Böcher, R.; Thauer, R. K. et al.; Shima, S.: A conspicuous nickel protein in microbial mats that oxidize methane anaerobically. Nature 426 (6968), pp. 878 - 881 (2003)

Hagemeier, C. H.; Shima, S.; Warkentin, E.; Thauer, R. K.; Ermler, U.: Coenzyme F₄₂₀-dependent methylenetetrahydromethanopterin de­hydrogenase from Methanopyrus kandleri: the selenome­thionine-labelled and non-labelled enzyme crystallized in two different forms. Acta Crystallographica Section D - Structural Biology 59, pp. 1653 - 1655 (2003)

Mamat, B.; Roth, A.; Grimm, C.; Ermler, U.; Tziatzios, C.; Schubert, D.; Thauer, R. K.; Shima, S.: Crystal structures and enzymatic properties of three formyltransferases from archaea: Environmental adaptation and evolutionary relationship. Protein Science 11 (9), pp. 2168 - 2178 (2002)

Warkentin, E.; Mamat, B.; Sordel-Klippert, M.; Wicke, M.; Thauer, R. K.; Iwata, M.; Iwata, S.; Ermler, U.; Shima, S.: Structures of F₄₂₀H²:NADP⁺ oxidoreductase with and without its substrates bound. The EMBO Journal 20 (23), pp. 6561 - 6569 (2001)

Grabarse, W.; Mahlert, F.; Duin, E. C.; Goubeaud, M.; Shima, S.; Thauer, R. K.; Lamzin, V.; Ermler, U.: On the mechanism of biological methane formation: structural evidence for conformational changes in methyl-coenzyme M reductase upon substrate binding. Journal of Molecular Biology (London) 309 (1), pp. 315 - 330 (2001)

Shima, S.; Sordel-Klippert, M.; Brioukhanov, A.; Netrusov, A.; Linder, D.; Thauer, R. K.: Characterization of a heme-dependent catalase from Methanobrevibacter arboriphilus. Applied and Environmental Microbiology 67 (7), pp. 3041 - 3045 (2001)

Grabarse, W.; Mahlert, F.; Shima, S.; Thauer, R. K.; Ermler, U.: Comparison of three methyl-coenzyme M reductases from phylogenetically distant organisms: unusual amino acid modification, conservation and adaptation. Journal of Molecular Biology (London) 303 (2), pp. 329 - 344 (2000)

Buurmann, G.; Shima, S.; Thauer, R. K.: The metal-free hydrogenase from methanogenic archaea: evidence for a bound cofactor. FEBS Letters 485 (2-3), pp. 200 - 204 (2000)

Shima, S.; Warkentin, E.; Grabarse, W.; Sordel, M.; Wicke, M.; Thauer, R. K.; Ermler, U.: Structure of coenzyme F₄₂₀ dependent methylenetetrahydromethanopterin reductase from two methanogenic archaea. Journal of Molecular Biology (London) 300 (4), pp. 935 - 950 (2000)

Selmer, T.; Kahnt, J.; Goubeaud, M.; Shima, S.; Grabarse, W.; Ermler, U.; Thauer, R. K.: The Biosynthesis of Methylated Amino Acids in the Active Site Region of Methyl-coenzyme M Reductase. The Journal of Biological Chemistry 275 (6), pp. 3755 - 3760 (2000)

Brioukhanov, A.; Netrusov, A.; Sordel, M.; Thauer, R.; Shima, S.: Protection of Methanosarcina barkeri against oxidative stress: identification and characterization of an iron superoxide dismutase. Archives of Microbiology 174 (3), pp. 213 - 216 (2000)

Shima, S.; Thauer, R. K.; Ermler, U.; Durchschlag, H.; Tziatzios, C.; Schubert, D.: A mutation affecting the association equilibrium of formyltransferase from the hyperthermophilic Methanopyrus kandleri and its influence on the enzyme's activity and thermostability. European Journal of Biochemistry 267 (22), pp. 6619 - 6623 (2000)

Shima, S.; Netrusov, A.; Sordel, M.; Wicke, M.; Hartmann, G.; Thauer, R. K.: Purification, characterization, and primary structure of a monofunctional catalase from Methanosarcina barkeri. Archives of Microbiology 171 (5), pp. 317 - 323 (1999)