Publications of Seigo Shima

Engilberge, S.; Wagner, T.; Santoni, G.; Breyton, C.; Shima, S.; Franzetti, B.; Riobe, F.; Maury, O.; Girard, E.: Protein crystal structure determination with the crystallophore, a nucleating and phasing agent. JOURNAL OF APPLIED CRYSTALLOGRAPHY 52, pp. 722 - 731 (2019)

Wagner, T.; Ermler, U.; Shima, S.: The methanogenic CO₂ reducing-and-fixing enzyme is bifunctional and contains 46 [4Fe-4S] clusters. Science 354 (6308 Sp. Iss. SI), pp. 114 - 117 (2016)

Wagner, T.; Kahnt, J.; Ermler, U.; Shima, S.: Didehydroaspartate Modification in Methyl-CoenzymeM Reductase Catalyzing Methane Formation. Angewandte Chemie-International Edition 55 (36), pp. 10630 - 10633 (2016)

Duin, E.C.; Wagner, T.; Shima, S.; Prakash, D.; Cronin, B.; Yanez-Ruiz, D.R.; Duval, S.; Rümbeli, R.; Stemmler, R.T.; Thauer, R.K. et al.; Kindermann, M.: Mode of action uncovered for the specific reduction of methane emissions from ruminants by the small molecule 3-nitrooxypropanol. Proceedings of the National Academy of Sciences of the United States of America 113 (22), pp. 6172 - 6177 (2016)

Tamura, H.; Salomone-Stagni, M.; Fujishiro, T.; Warkentin, E.; Meyer-Klaucke, W.; Ermler, U.; Shima, S.: Crystal Structures of [Fe]-Hydrogenase in Complex with Inhibitory Isocyanides: Implications for the H₂-Activation Site. Angewandte Chemie-International Edition 52 (37), pp. 9656 - 9659 (2013)

Shima, S.; Krueger, M.; Weinert, T.; Demmer, U.; Kahnt, J.; Thauer, R. K.; Ermler, U.: Structure of a methyl-coenzyme M reductase from Black Sea mats that oxidize methane anaerobically. Nature 481 (7379), pp. 98 - 101 (2012)

Ceh, K.; Demmer, U.; Warkentin, E.; Moll, J.; Thauer, R. K.; Shima, S.; Ermler, U.: Structural basis of the Hhydride transfer mechanism in F₄₂₀ -dependent methylenetetrahydromethanopterin dehydrogenase. Biochemistry 48, pp. 10098 - 10105 (2009)

Hiromoto, T.; Ataka, K.; Pilak, O.; Vogt, S.; Stagni, M. S.; Meyer-Klaucke, W.; Warkentin, E.; Thauer, R. K.; Shima, S.; Ermler, U.: The crystal structure of C176A mutated [Fe]-hydrogenase suggests an acyl-iron ligation in the active site iron complex. FEBS Letters 583 (3), pp. 585 - 590 (2009)

Mayr, S.; Latkoczy, C.; Krüger, M.; Günther, D.; Shima, S.; Thauer, R. K.; Widdel, F.; Jaun, B.: Structure of an F430 variant from archaea associated with anaerobic oxidation of methane. Journal of the American Chemical Society 130 (32), pp. 10758 - 10767 (2008)

Shima, S.; Pilak, O.; Vogt, S.; Schick, M.; Stagni, M. S.; Meyer-Klaucke, W.; Warkentin, E.; Thauer, R. K.; Ermler, U.: The crystal structure of [Fe]-hydrogenase reveals the geometry of the active site. Science 321 (5888), pp. 572 - 575 (2008)

Guo, Y.; Wang, H.; Xiao, Y.; Vogt, S.; Thauer, R. K.; Shima, S.; Volkers, P. I.; Rauchfuss, T. B.; Pelmenschikov, V.; Case, D. A. et al.; Alp, E. E.; Sturhahn, W.; Yoda, Y.; Cramer, S. P.: Characterization of the Fe site in iron-sulfur cluster-free hydrogenase (Hmd) and of a model compound via nuclear resonance vibrational spectroscopy (NRVS). Inorganic Chemistry 47 (10), pp. 3969 - 3977 (2008)

Vogt, S.; Lyon, E.; Shima, S.; Thauer, R. K.: The exchange activities of [Fe] hydrogenase (iron-sulfur-cluster-free hydrogenase) from methanogenic archaea in comparison with the exchange activities of [FeFe] and [NiFe] hydrogenases. Journal of Biological Inorganic Chemistry 13 (1), pp. 97 - 106 (2008)

Kahnt, J.; Buchenau, B.; Mahlert, F.; Krueger, M.; Shima, S.; Thauer, R. K.: Post-translational modifications in the active site region of methyl-coenzyme M reductase from methanogenic and methanotrophic archaea. The FEBS Journal 274, pp. 4913 - 4921 (2007)

Seedorf, H.; Hagemeier, C.; Shima, S.; Thauer, R. K.; Warkentin, E.; Ermler, U.: Structure of coenzyme F₄₂₀ H₂ oxidase (FprA), a di-iron flavoprotein from methanogenic Archaea catalyzing the reduction of O₂ to H₂ O. The FEBS Journal 274, pp. 1588 - 1599 (2007)

Korbas, M.; Vogt, S.; Meyer-Klaucke, W.; Bill, E.; Lyon, E.; Thauer, R. K.; Shima, S.: The Iron-Sulfur Cluster-free Hydrogenase (Hmd) Is a Metalloenzyme with a Novel Iron Binding Motif. Journal of Biological Chemistry 281 (41), pp. 30804 - 30813 (2006)

Pilak, O.; Mamat, B.; Vogt, S.; Hagemeier, C. H.; Thauer, R. K.; Shima, S.; Vonrhein, C.; Warkentin, E.; Ermler, U.: The crystal structure of the apoenzyme of the iron-sulphur cluster-free hydrogenase. Journal of Molecular Biology 358 (3), pp. 798 - 809 (2006)

Acharya, P.; Eberhard, W.; Ulrich, E.; Rudolf, T.; Shima, S.: The Structure of Formylmethanofuran: Tetrahydromethanopterin Formyltransferase in Complex with its Coenzymes. Journal of Molecular Biology 357, pp. 870 - 879 (2006)

Shima, S.; Thauer, R. K.: Methyl-coenzyme M reductase and the anaerobic oxidation of methane in methanotrophic Archaea. Current Opinion in Microbiology 8 (6), pp. 643 - 648 (2005)

Shima, S.; Lyon, E. J.; Thauer, R. K.; Mienert, B.; Bill, E.: Mössbauer studies of the iron-sulfur cluster-free hydrogenase: The electronic state of the mononuclear Fe active site. Journal of the American Chemical Society 127 (29), pp. 10430 - 10435 (2005)

Aufhammer, S. W.; Warkentin, E.; Ermler, U.; Hagemeier, C. H.; Thauer, R. K.; Shima, S.: Crystal structure of methylenetetrahydromethanopterin reductase (Mer) in complex with coenzyme F₄₂₀: Architecture of the F₄₂₀/FMN binding site of enzymes within the nonprolyl cis-peptide containing bacterial luciferase family. Protein Science 14 (7), pp. 1840 - 1849 (2005)